Gene detail information of Glyur001341s00032160 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G11700.1 | 3.00E-41 | Protein of unknown function, DUF584 |
| NR | XP_004486158.1 | 4.14E-105 | PREDICTED: uncharacterized protein LOC101500992 [Cicer arietinum] |
| trEMBL | tr|A0A072V4X8|A0A072V4X8_MEDTR | 1.00E-92 | Senescence regulator {ECO:0000313|EMBL:KEH36847.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold01341 | 50391 | 51615 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur001341s00032160.1 | PF04520.8 | Senescence_reg | 32 | 212 | 2.20E-41 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 113.102 |
| SRR1783600 | control | 112.811 |
| SRR1783602 | moderate drought stress | 189.326 |
| SRR1811619 | moderate drought stress | 184.677 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 151.097 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 146.442 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 30.555 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 28.129 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 272.048 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 283.183 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 32.789 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 32.645 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 139.786 |
| SRR2868004 | Drought Stress (root) | 164.181 |
| SRR2967015 | Control (root) | 114.239 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 55.298 |
| SRR9715740 | Leaf | 75.447 |
| SRR9715741 | Leaf | 50.058 |
| SRR9715739 | Root | 264.531 |
| SRR9715742 | Root | 79.971 |
| SRR9715743 | Root | 102.428 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 12.036 |
| SRR8749028 | MeJA induced 9h | 10.419 |
| SRR8749029 | MeJA induced 9h | 6.865 |
| SRR8749030 | Uninduced | 1.771 |
| SRR8749031 | Uninduced | 0.415 |
| SRR8749032 | Uninduced | 10.524 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 124.926 |
| SRR8400027 | Control - Root | 115.313 |