Gene detail information of Glyur001341s00032158 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G01380.1 | 4.00E-13 | Homeodomain-like superfamily protein |
| NR | XP_004486159.1 | 1.57E-23 | PREDICTED: transcription factor CPC-like [Cicer arietinum] |
| Swissprot | tr|Q9LNI5|ETC1_ARATH | 1.00E-16 | MYB-like transcription factor ETC1 |
| trEMBL | tr|A0A072V6B3|A0A072V6B3_MEDTR | 8.00E-24 | Myb transcription factor {ECO:0000313|EMBL:KEH36848.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold01341 | 43411 | 44111 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | MYB-related |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur001341s00032158.1 | PF00249.26 | Myb_DNA-binding | 35 | 74 | 9.40E-09 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 10.682 |
| SRR1783600 | control | 13.858 |
| SRR1783602 | moderate drought stress | 14.456 |
| SRR1811619 | moderate drought stress | 16.678 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 7.636 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 8.160 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.297 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.289 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 14.701 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 12.456 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.000 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 12.167 |
| SRR2868004 | Drought Stress (root) | 23.809 |
| SRR2967015 | Control (root) | 39.172 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 0.576 |
| SRR9715740 | Leaf | 0.000 |
| SRR9715741 | Leaf | 1.314 |
| SRR9715739 | Root | 9.335 |
| SRR9715742 | Root | 11.263 |
| SRR9715743 | Root | 11.021 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 1.050 |
| SRR8749028 | MeJA induced 9h | 0.791 |
| SRR8749029 | MeJA induced 9h | 0.366 |
| SRR8749030 | Uninduced | 3.713 |
| SRR8749031 | Uninduced | 5.300 |
| SRR8749032 | Uninduced | 16.414 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 20.666 |
| SRR8400027 | Control - Root | 35.423 |