Gene detail

Gene detail information of Glyur001341s00032155

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G04640.1	4.00E-165	ATPase, F1 complex, gamma subunit protein
NR	XP_003546151.2	0	PREDICTED: ATP synthase gamma chain, chloroplastic [Glycine max]
COG	YP_007160942.1	6.00E-124	ATP synthase F1 subcomplex subunit gamma [Cyanobacterium aponinum PCC 10605]
Swissprot	tr\|P29790\|ATPG_TOBAC	0	ATP synthase gamma chain, chloroplastic (Precursor)
trEMBL	tr\|I1MFH3\|I1MFH3_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA15G11490.1}

Sequence

Transcript Sequence

>Glyur001341s00032155.1
ATGTCTTGCTCCAACATCACAATGTTGGTGTCCTCAAAACCTTCTCTACCCGATGCCTCTACCCTCTCCTTCCGTTCTTCCCTCAACCCTTTTCAGCTTCCTTCACAAAACCCATCTTCCTGCAGCAACCCTTCACGACCCTCTTNTGCCACCCCAGTTCAGTGTGGTCTCAGAGAACTCAGAACCCGAATCGATTCAGTGAAGAACACCCAGAAAATCACAGAGGCAATGAAGCTTGTTGCTGCNGCAAAAGTCAGAAGAGCCCAAGAAGCTGTTGTCAATGGAAGACCCTTCTCAGAGACCCTTGTNGAAGTCCTCTACAACATCAACGAACAGCTCCAAACTGAAGATGTTGATACCCCTCTCACCAAGGTTAGACCCGTGAAGAAGGTTGCACTTGTTGTTTGCACAGGTGATCGAGGTCTCTGTGGTGGGTTCAACAACCAAATCATAAAGAAAGCTGAGGCTAGAATTGCAGAGTTGAAGGGTCTTGGTCTTGATTACACTGTTATCAGTGTTGGCAAAAAGGGTAACTCTTATTTCATTCGTAGGCCTTACATACCCGTTGATAGGTTTCTTGAAGGTGGTACACTTCCAACTGCTAAAGAGGCACAAGCAATTGCTGATGATGTTTTCTCACTGTTTGTGAGTGAAGAGGTTGATAAAGTTGAGCTTTTGTACACAAAATTTGTGTCACTTGTGAAGTCAGATCCTGTGATTCATACTTTGCTTCCACTATCACCAAAGGGTGAGATCTGTGATGTGAATGGAACGTGTGTGGATGCTGCTGAGGATGAGTTCTTCAGGTTAACNACAAAGGAAGGGAAGTTGACTTTGGAAAGGGATGCTGTGAGGACTAAGACTTCAGATTTCTCACCAATCTTGCAATTTGAACAGGACCCAGTTCAGATCCTTGATGCACTGTTGCCTCTTTATCTCAACAGCCAGATTTTGAGGGCATTGCAGGAATCGCTTGCTAGTGAACTAGCTGCTAGAATGAGTGCCATGAGTAATGCTACTGATAATGCAATTGAGTTGAAGAAGAACTTGTCAATTGTCTACAACAGGGAACGCCAGGCTAAGATCACTGGTGAAATTCTGGAAATTGTTGCTGGTGCTGATGCCCTGGTATAG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold01341	30177	31310	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0015986 ATP synthesis coupled proton transport

cellular_component
GO:0045261 proton-transporting ATP synthase complex, catalytic core F(1)

molecular_function

GO:0046933 proton-transporting ATP synthase activity, rotational mechanism

GO:0046961 proton-transporting ATPase activity, rotational mechanism

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001341s00032155.1	PF00231.14	ATP-synt	57	376	4.30E-96

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	39.644
SRR1783600	control	40.670
SRR1783602	moderate drought stress	44.806
SRR1811619	moderate drought stress	45.189

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	70.372
DRR006520	Root Summer glycyrrhizin high producing strain	70.030
DRR006521	Root Winter glycyrrhizin high producing strain	4.208
DRR006522	Root Winter glycyrrhizin high producing strain	4.123
DRR006523	Root Summer glycyrrhizin low producing strain	41.306
DRR006524	Root Summer glycyrrhizin low producing strain	41.674
DRR006525	Leaf Summer glycyrrhizin high producing strain	1260.363
DRR006526	Leaf Summer glycyrrhizin high producing strain	1252.334

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	20.031
SRR2868004	Drought Stress (root)	17.609
SRR2967015	Control (root)	12.767

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	695.503
SRR9715740	Leaf	916.606
SRR9715741	Leaf	653.295
SRR9715739	Root	16.250
SRR9715742	Root	23.003
SRR9715743	Root	18.155

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	26.596
SRR8749028	MeJA induced 9h	22.128
SRR8749029	MeJA induced 9h	11.980
SRR8749030	Uninduced	5.059
SRR8749031	Uninduced	1.812
SRR8749032	Uninduced	8.419

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	20.823
SRR8400027	Control - Root	17.965