Gene detail

Gene detail information of Glyur001341s00032153.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G11720.2	0	starch synthase 3
NR	XP_007133097.1	0	hypothetical protein PHAVU_011G151400g [Phaseolus vulgaris]
COG	YP_008595.1	1.00E-110	glycogen synthase [Candidatus Protochlamydia amoebophila UWE25]
Swissprot	tr\|Q43846\|SSY3_SOLTU	0	Soluble starch synthase 3, chloroplastic/amyloplastic (Precursor)
trEMBL	tr\|A4F2M4\|A4F2M4_PHAVU	0	Uncharacterized protein {ECO:0000313\|EMBL:ESW05091.1}

Sequence

Transcript Sequence

>Glyur001341s00032153.1
CGAAGACCTGAAAATGGGACACCGCCTTCGATTGTACGATAACCACTAAAATATTAGTCGTTTTGGAGCGTTGGATGTCATCGCGACACTGTCGTTTACTCCTACGAATGTCCATCGCGCTTCGCAAAGATTCCACACCAACTTGACGGTGAAAGTGCTTCGCGGATGCACATAATAAGAGTATATGCGTGTGGCTGAGACTTAGATGCTTTGAATCAAATCAAAACACTTCACAGTCTTTGTTTTTTAATTTTTTTCATGATTTGGTTTACAGATACAGAGTGAGCTTGCTTCAGTTGCTTGTGTGGTTCAGTCGTTAATTCGTTATTATTAACACTAACGATCAAATACTCACATCACTGGCACAGCCTAAATAGAAGGAAGACGAAACACAACGTCGTTCGAAGCAAAATTAGTAACTATGGAGATGTCGTTGCAACTAAACTGCAAAACGGCGTTCCCCGACAGAGGCGGTTGTTTGAAGATCACTCCATTTTCTGCCTTCCTCCGTCGTTTTCCAATGACAGCTGCAACTGGCTTCCAATCTTCATGTTGCAAGGCGGGTTGGGGTGTTTCTTGCGTCAATGATAGTGCAGATTTTTCTCGGAGGAGACAACAGAAGAAGGTGTCAACTGCAAGGTCCAAGGGCTCTACTCCAAAAGGTTTTGTCCCAAAATCGCCTATTGAACCAAGCAGCAAGAACAGGAGTAAGAAGAATACTAGTAGAGTCAAGGGAGACTCTTTAGCTCCAACCGTCAGTGAGATTTCTGGGGATGATAATAAACAAACACTTGATGTGAATACTGACGATGATAAAGAAGGGGCAGTTGAATTTTCCCAGGAGGAAAAATTTGAGGTTGTAGATAGAACTAATGAAATTACCGGGGAGTTGGGTGAATCATCCTTGCTAGATNAGACACCGGGTGTTGTTGAGAGCAATCGAGGTGAGGAAATTGGAAACGTTTCTATAGTTGATGAGGAGGAGGGAACTTCTTACATTGGAGATGTTGGGAATGTTAAAGATTCAGAGGACAGGACNCTGGACTATGCAGAAATTGACGAAAATGTTGAAGGAGTGACCACTGATACTGATGGTCAAATCACTGCTGGTGCCATTGAGGAAACAACCGCTGCTACTGATGACAGAGCAAATGAGGAAGCTTCTCGGCTGTTGAAGTTAAAGTTGGAAGAAGATTTGCGAAAGCAGGAAATAGAGAGGATTGCTGAGGAAAGCCTTTTACAAGGGACCAAGATGTTTGTGTATCCTCCTGTGGTTAAACCTGATCAAGATATAGAAGTGTTTCTTAACAAGAATCTTTCAACCCTAAGTGACGAACCAGACATTCTGATCATGGGAGCATTTAATGGTTGGAGGTGGAAATCTTTTACCATTAGGTTGAATAAAACGCACCTCAAGGATGATTGGTGGAGTTGCCAATTACATGTGCCAAGAGAAGCCTACAAAGTAGACTTCGTGTTCTTCAATGGAGAAGATGTCTACGACAATAATGACCAAAAAGACTTCTGCATACCTGTTGATGGCGGAATGGATGCATTAACATTTGAAGAATTCTTGCTTGAGGAGAAACGTAAAGAATTAGAAAAACTTGCTAAGGAGCAAGCTGAAAGGGAAAGACAGGCTGAAGAGCAAAGGCGAATTGAAGCAGATAAAGCTGCAAANGAAGCGGACAGGTCACAGGCGAGAGTGGAGGTTGAAAGAAGGCGAGAAACATTGCTGCAATTTATGAAAAAGGCTGTAAGTTCCATTGATAATGTTTGGTATATTGAACCTAGTGAATTCAAAGGCAAGGACTTGGTCAGATTATATTATAACGGAAGCTCGGGACCTCTTGAACATGCTAAGGAAATATGGATTCATGGTGGGCACAATAATTGGAAGGATGGATTATCAATTGTTGAAAGGTTTGTCAAATCTGTTGTAAAAGGTGGTGGTTGGTGGTATGCTGATGTTGTTGTACCTGACCAAGCTCTTGTCCTGGATTGGGTCTTTGCTGATGGTCCACCTCAAAATGCCATTGTGTATGATAACAACCATAATCAAGATTTTCATGCTATTGTCCCTATGGCTGCACCTGATGAACAGTATTGGGTTGAGGAAGAGCAGCTGATATACAGAAAACTTCAGGAGGAGAGGAAGTTGAGAGAGGAAGCTATGCGTACAAAGGCTGAAAAAANAGCACGAATGAAAGCTGAAACAAAGGAAAAAACTTTGAAAAGATTTTTGCTATCTCAAAAGCATATAGTCTTTACTGAGCCTCTTGATGTTCAAGCAGGGAGCACAGTGACAGTATTTTATAACCCCTCCAACACAAATCTGAATGGAAAACCTGNGGTTTGGTTTAGATGTTCATTTAATCGTTGGTCTCACCGTAATGGTCCATTGCCACCTCAGAGAATGTTTCCTGCAGAGAATGGCACTCATGTCAAAGCCTCTGTTAAGGTTCCACTGGATGCATACGTGATGGACTTTGTATTCTCTGAGAATGAAAATGGTGGAGTTTTTGATAACAAATTTGGAATGGACTATCACATACCAGTTTTTGGAGGTATTGTAAAGGAACCACCTTTGCATATCATCCATATTGCCGTTGAGATGGCCCCAATTGCAAAGGTTGGAGGCCTTGGTGATGTTGTTACTAGTCTATCCCGTGCTGTTCAGGATTTAAACCACAATGTGGACATCATTCTTCCAAAGTATGACTGTTTGAACCTTAGCAATGTAAAGGACTTTCAATTTCACAAAAACTATTTCTGGGCTGGGACTGAAATAAAAGTATGGCACGGAAAGGTTGAAGGCCTCTCTGTCTACTTTTTGGAGCCTCAAAATGGATTCTTTTGGGTTGGCTGTGTATATGGTCGTGGGAATGATGCAGAGAGATTTGGTTTTTTTTGTCATGCCGCTCTTGAATTTCTACTCCAAAACGGATCTCATCCTGATATCATCCACTGCCATGATTGGTCGAGTGCTCCAGTTGCATGGCTATTTAAAGACAACTATACAAATTATGGTCTTAGCAAGGCACGGGTAGTCTTCACAATTCATAACCTTGAATTTGGAGCCCATTTCATTGCAAAAGCTATGGCATATGCAGACAAGGCTACAACTGTTTCCCCCACGTATTCAAGGGAGGTTGCTGGGAATCCTGCAGTTGCTCCTAATCTTTACAAGTTTCATGGTATAATAAATGGAATTGACCCAGATATATGGGACCCATATAATGATAGCTTCATTCCTGTACCATACACATCAGACAATGTCGTTGAAGGAAAAAGAGCTTCCAAGGAAGCCTTGCAACAAAAGCTTGGTTTAAAAAAAGCTGATCTTCCTTTGGTTGGAGTTATTAGTCGATTGACTCATCAGAAAGGGACCCATCTCATCAAACATGCCATATGGCATACCCTAGAACGCGGTGGACAGGTTGTATTACTTGGTTCAGCTCCAGATCCCCGCGTTCAAAATGATTTTGTGAATTTGGCCAATCAGTTGCATTCCTCTCATGCTGATCGTGCTAGACTTTGCCTTGCATATGATGAGCCTCTTTCCCACTTGATATATGCTGGTGCTGATTTCATTCTTGTTCCTTCAATCTTTGAGCCATGTGGACTCACTCAACTCACAGCAATGAGATATGGTTCAATACCTATTGTTCGAAAAACTGGAGGACTTTACGATACAGTATTTGACGTTGACCATGATTGTGATAGAGCACAAGCACAAGGTCTTGAGCCAAATGGATTTAGTTTTGATGGAGCTGATGTTGGAGGTGTTGATTATGCTCTCAATAGGGCAATATCAGCGTGGTATGAGGGCCGTGATTGGTTTAACACTTTATGCAAGAGGGTAATGGAGCAAGACTGGTCTTGGAACCGCCCTGCTCTTGACTATTTGGAGCTTTACCATGCAGCACGCAAGTTGGAATGAGATTTTAATGGACAGGGAATGATATGCAAATTATGATATTCATATATCCCCTTTGTACAGCTTTAGTGGTAAGCTTTATTCTAAGAGTAATTAGTTGCACATAGAGAATCCTAGTGAAAAATAACTGCAAGGTGACATCAGTGTGTAGAGACGAGGCTCAAATGGTTCATTATTTTGTTTGTCACGCAATAAGTAGGTCAGCTTTACATAGTTTTAGTATATGCTGAGAGATCGTGTTTTTAAATAGCTGAACTTGTGAAATGCATTGCAGAATAGATCCAGATGTGCCAGTTCTTTTTTGTGCATTAAAAAGAGCCATTTTTAATGTCTTTTGGTAGTGGCTGATGCCAACTTTAGACAAGGTAGAAATTAAGAAAAAAATTATTGGACAGTGTATTATTTATTAAAAACTGAAATGACTTTGATCACCTCGACCAAGGTTGATAAAAAGTT

Protein Sequence

>Glyur001341s00032153.1
MEMSLQLNCKTAFPDRGGCLKITPFSAFLRRFPMTAATGFQSSCCKAGWGVSCVNDSADFSRRRQQKKVSTARSKGSTPKGFVPKSPIEPSSKNRSKKNTSRVKGDSLAPTVSEISGDDNKQTLDVNTDDDKEGAVEFSQEEKFEVVDRTNEITGELGESSLLDXTPGVVESNRGEEIGNVSIVDEEEGTSYIGDVGNVKDSEDRTLDYAEIDENVEGVTTDTDGQITAGAIEETTAATDDRANEEASRLLKLKLEEDLRKQEIERIAEESLLQGTKMFVYPPVVKPDQDIEVFLNKNLSTLSDEPDILIMGAFNGWRWKSFTIRLNKTHLKDDWWSCQLHVPREAYKVDFVFFNGEDVYDNNDQKDFCIPVDGGMDALTFEEFLLEEKRKELEKLAKEQAERERQAEEQRRIEADKAAXEADRSQARVEVERRRETLLQFMKKAVSSIDNVWYIEPSEFKGKDLVRLYYNGSSGPLEHAKEIWIHGGHNNWKDGLSIVERFVKSVVKGGGWWYADVVVPDQALVLDWVFADGPPQNAIVYDNNHNQDFHAIVPMAAPDEQYWVEEEQLIYRKLQEERKLREEAMRTKAEKXARMKAETKEKTLKRFLLSQKHIVFTEPLDVQAGSTVTVFYNPSNTNLNGKPXVWFRCSFNRWSHRNGPLPPQRMFPAENGTHVKASVKVPLDAYVMDFVFSENENGGVFDNKFGMDYHIPVFGGIVKEPPLHIIHIAVEMAPIAKVGGLGDVVTSLSRAVQDLNHNVDIILPKYDCLNLSNVKDFQFHKNYFWAGTEIKVWHGKVEGLSVYFLEPQNGFFWVGCVYGRGNDAERFGFFCHAALEFLLQNGSHPDIIHCHDWSSAPVAWLFKDNYTNYGLSKARVVFTIHNLEFGAHFIAKAMAYADKATTVSPTYSREVAGNPAVAPNLYKFHGIINGIDPDIWDPYNDSFIPVPYTSDNVVEGKRASKEALQQKLGLKKADLPLVGVISRLTHQKGTHLIKHAIWHTLERGGQVVLLGSAPDPRVQNDFVNLANQLHSSHADRARLCLAYDEPLSHLIYAGADFILVPSIFEPCGLTQLTAMRYGSIPIVRKTGGLYDTVFDVDHDCDRAQAQGLEPNGFSFDGADVGGVDYALNRAISAWYEGRDWFNTLCKRVMEQDWSWNRPALDYLELYHAARKLE

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold01341	12769	26594	-

Gene family

Gene family	subfamily
Carbohydrate-Active enzymes Family	CBM53,CBM53,CBM53,GT5

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process

GO:0009058 biosynthetic process

GO:0009250 glucan biosynthetic process

molecular_function

GO:0009011 starch synthase activity

GO:2001070 starch binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001341s00032153.1	PF03423.8	CBM_25	288	372	2.60E-28
Glyur001341s00032153.1	PF03423.8	CBM_25	464	553	4.40E-29
Glyur001341s00032153.1	PF03423.8	CBM_25	625	713	1.70E-26
Glyur001341s00032153.1	PF08323.6	Glyco_transf_5	724	912	2.30E-49
Glyur001341s00032153.1	PF00534.15	Glycos_transf_1	971	1097	6.50E-08

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	21.186
SRR1783600	control	21.330
SRR1783602	moderate drought stress	32.002
SRR1811619	moderate drought stress	31.861

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	27.634
DRR006520	Root Summer glycyrrhizin high producing strain	27.300
DRR006521	Root Winter glycyrrhizin high producing strain	40.289
DRR006522	Root Winter glycyrrhizin high producing strain	39.635
DRR006523	Root Summer glycyrrhizin low producing strain	28.237
DRR006524	Root Summer glycyrrhizin low producing strain	28.189
DRR006525	Leaf Summer glycyrrhizin high producing strain	27.515
DRR006526	Leaf Summer glycyrrhizin high producing strain	27.199

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	30.554
SRR2868004	Drought Stress (root)	35.897
SRR2967015	Control (root)	39.144

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	31.790
SRR9715740	Leaf	40.997
SRR9715741	Leaf	42.989
SRR9715739	Root	3.420
SRR9715742	Root	28.364
SRR9715743	Root	25.088

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	11.136
SRR8749028	MeJA induced 9h	22.641
SRR8749029	MeJA induced 9h	8.926
SRR8749030	Uninduced	9.635
SRR8749031	Uninduced	6.046
SRR8749032	Uninduced	6.130

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	37.634
SRR8400027	Control - Root	42.442