Gene detail information of Glyur001340s00039132 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G14900.1 | 6.00E-16 | high mobility group A |
| NR | XP_004490811.1 | 3.17E-66 | PREDICTED: HMG-Y-related protein A-like [Cicer arietinum] |
| Swissprot | tr|Q00423|HMGYA_SOYBN | 9.00E-60 | HMG-Y-related protein A |
| trEMBL | tr|Q43877|Q43877_PEA | 1.00E-65 | HMGI/Y {ECO:0000313|EMBL:CAA61747.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold01340 | 67087 | 68547 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur001340s00039132.1 | PF00538.14 | Linker_histone | 56 | 123 | 1.10E-13 |
| Glyur001340s00039132.1 | PF02178.14 | AT_hook | 132 | 139 | 38 |
| Glyur001340s00039132.1 | PF02178.14 | AT_hook | 154 | 165 | 0.12 |
| Glyur001340s00039132.1 | PF02178.14 | AT_hook | 177 | 186 | 1.6 |
| Glyur001340s00039132.1 | PF02178.14 | AT_hook | 199 | 210 | 0.36 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 1.110 |
| SRR1783600 | control | 1.005 |
| SRR1783602 | moderate drought stress | 0.785 |
| SRR1811619 | moderate drought stress | 0.673 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.530 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.572 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 1.174 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 1.015 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 2.696 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 2.137 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 3.773 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 3.489 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 7.893 |
| SRR2868004 | Drought Stress (root) | 6.747 |
| SRR2967015 | Control (root) | 5.715 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 4.070 |
| SRR9715740 | Leaf | 5.374 |
| SRR9715741 | Leaf | 2.747 |
| SRR9715739 | Root | 0.752 |
| SRR9715742 | Root | 2.807 |
| SRR9715743 | Root | 1.789 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 5.974 |
| SRR8749028 | MeJA induced 9h | 9.101 |
| SRR8749029 | MeJA induced 9h | 7.320 |
| SRR8749030 | Uninduced | 6.436 |
| SRR8749031 | Uninduced | 4.402 |
| SRR8749032 | Uninduced | 6.178 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 3.974 |
| SRR8400027 | Control - Root | 2.290 |