Gene detail information of Glyur001340s00039128 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G14900.1 | 2.00E-17 | high mobility group A |
| NR | XP_003600727.1 | 2.12E-76 | HMG-Y-related protein A [Medicago truncatula] |
| Swissprot | tr|Q00423|HMGYA_SOYBN | 2.00E-47 | HMG-Y-related protein A |
| trEMBL | tr|G7J9E3|G7J9E3_MEDTR | 8.00E-77 | Linker histone H1 and h5 family protein {ECO:0000313|EMBL:AES70978.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold01340 | 24406 | 25898 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur001340s00039128.1 | PF00538.14 | Linker_histone | 13 | 74 | 9.40E-16 |
| Glyur001340s00039128.1 | PF02178.14 | AT_hook | 88 | 95 | 30 |
| Glyur001340s00039128.1 | PF02178.14 | AT_hook | 106 | 117 | 0.27 |
| Glyur001340s00039128.1 | PF02178.14 | AT_hook | 132 | 142 | 0.76 |
| Glyur001340s00039128.1 | PF02178.14 | AT_hook | 160 | 170 | 0.083 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 3.371 |
| SRR1783600 | control | 3.375 |
| SRR1783602 | moderate drought stress | 3.130 |
| SRR1811619 | moderate drought stress | 3.182 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 4.506 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 4.594 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 5.523 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 5.358 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 16.878 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 17.982 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 4.436 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 4.480 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 36.034 |
| SRR2868004 | Drought Stress (root) | 26.146 |
| SRR2967015 | Control (root) | 32.831 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 1.630 |
| SRR9715740 | Leaf | 6.955 |
| SRR9715741 | Leaf | 5.021 |
| SRR9715739 | Root | 3.991 |
| SRR9715742 | Root | 3.474 |
| SRR9715743 | Root | 3.957 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 22.500 |
| SRR8749028 | MeJA induced 9h | 20.823 |
| SRR8749029 | MeJA induced 9h | 20.030 |
| SRR8749030 | Uninduced | 6.001 |
| SRR8749031 | Uninduced | 1.829 |
| SRR8749032 | Uninduced | 4.285 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 9.830 |
| SRR8400027 | Control - Root | 8.535 |