Gene detail

Gene detail information of Glyur001339s00035229

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G15260.2	1.00E-108	Protein phosphatase 2C family protein
NR	XP_004510031.1	2.34E-175	PREDICTED: probable protein phosphatase 2C 39-like [Cicer arietinum]
COG	YP_003709340.1	3.00E-17	serine/threonine PP2C protein phosphatase [Waddlia chondrophila WSU 86-1044]
Swissprot	tr\|Q9LDA7\|P2C39_ARATH	1.00E-145	Probable protein phosphatase 2C 39
trEMBL	tr\|Q9ZPL8\|Q9ZPL8_LOTJA	3.00E-169	Protein phosphatase type 2C {ECO:0000313\|EMBL:AAD17805.1}

Sequence

Transcript Sequence

>Glyur001339s00035229.1
CGAAAAGTCGTGTCAACGCGACAGTAATCCTCATCATCCTTAATAACACACCCGTCTTCCTCTTATTCCTTCTTTTCTCTCCTATTCTCTTCCTCTTCACCATCTCAATCCCTCTCTTCTTCCCCTGCCTCGTTTTCGTTTACCGTGTTAAACAACAACAAAAAATAATTTTATAAAAAAAAAATACCACACTCTACGTGGCCATAATACTCACATAACCCACCACCCCCTTAAATCTACATATATATACTCTCTAGGGACTCCNCTATGGCTGGCAGAGAAATCCTCCATAAGATGAAGGAAAAAGTTTTGGGTTCCTCTGATCCTGACTCAGGGAAAGGAAAGAGCAAGATGTCGAAGCATATAACTCATGGCTTTCACTTGGTAAAGGGAAGATCAGATCATGCCATGGAAGACTATGTCGTTGCTCAATTTAAGCAAGTTGATAACAATGAGTTGGGTTTATTTGCAATATTTGATGGCCATTCAGGCCATAATGTACCTGATTACTTGCGAACTCATTTGTTTGATAACATCTTAAAGGAGCCTGAATTCTGGACAGAACCTGCTGACGCTGTCAAGAGAGCATATATTGTAACTGATTCTACTATTTTAGAGAAATCTGGTGAATTGGGTAGAGGGGGTTCAACTGCAGTTACAGCAATATTGATCAATTGTCAGAAGCTAGTAGTGGCTAATATTGGGGATTCTCGGGCTGTCTTATGCGTGAATGGCGCCGCCAAACAACTGACAGTGGATCACGAACCAACCATAGAAAGTGAGGATATCAAAAACAGAGGCGGTTTTGTATCAAACTTCCCAGTGCTAAGGACGGCTTTTGTGATCTATCCAGGGGACGTTCCGCGGGTCGACGGGCAGTTGGCAGTGTCAAGGGCATTTGGTGACAAAAGCCTAAAAAAACACTTGAGCTCAGAACCATATGTGAAAGTGGAGATGATAGATGATTATGCAGAGTTTGTCATGTCAAATGAAGAAGCAGTTGATGCCATCAAGGATATCAAGGATGCTCGGTCAGCAGCAAAGCGCCTCACTGAAGAAGCACTTAACAGGAAAAGCTCAGATGATATCTCTTGCGTTGTTGTGAGGTTTCAGTGATCTCACAAAAACTCACTTAGAAGATTTTTATATGCAAACTTTAGCGTATATATGATGATAAATGTTGAAATGTTGAATGTCCAATTATCCATTGGGTGTTATTATGCCGAGGGCATACAAGTGTGTGATCTCTTTCCGTTTACCTGTNTTCATCCAAAGCAACTTGGAGAGCGTGTTGTTTGATGTAGTAATGCAAGAAAAGACTTAGTTTTGGATTGTGAAGACAAAAGTAATTCATATGA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold01339	15953	19829	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0003824 catalytic activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001339s00035229.1	PF00481.16	PP2C	45	274	1.60E-38

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	29.876
SRR1783600	control	29.556
SRR1783602	moderate drought stress	16.179
SRR1811619	moderate drought stress	15.960

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	78.663
DRR006520	Root Summer glycyrrhizin high producing strain	77.770
DRR006521	Root Winter glycyrrhizin high producing strain	36.891
DRR006522	Root Winter glycyrrhizin high producing strain	35.945
DRR006523	Root Summer glycyrrhizin low producing strain	96.527
DRR006524	Root Summer glycyrrhizin low producing strain	96.562
DRR006525	Leaf Summer glycyrrhizin high producing strain	46.279
DRR006526	Leaf Summer glycyrrhizin high producing strain	45.892

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	99.466
SRR2868004	Drought Stress (root)	118.827
SRR2967015	Control (root)	117.543

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	126.032
SRR9715740	Leaf	92.997
SRR9715741	Leaf	158.003
SRR9715739	Root	32.457
SRR9715742	Root	90.847
SRR9715743	Root	79.353

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	140.432
SRR8749028	MeJA induced 9h	216.740
SRR8749029	MeJA induced 9h	169.267
SRR8749030	Uninduced	181.463
SRR8749031	Uninduced	137.840
SRR8749032	Uninduced	96.477

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	70.774
SRR8400027	Control - Root	79.027