Gene detail

Gene detail information of Glyur001335s00047043.1

Functional Annotation

Database	Orthologs	Annotation
TAIR	AT2G38110.1	glycerol-3-phosphate acyltransferase 6
NR	KEH28858.1	glycerol-3-phosphate acyltransferase [Medicago truncatula]
Swissprot	tr\|O80437\|GPAT6_ARATH	Glycerol-3-phosphate 2-O-acyltransferase 6
trEMBL	tr\|A0A072UIH6\|A0A072UIH6_MEDTR	Glycerol-3-phosphate acyltransferase {ECO:0000313\|EMBL:KEH28858.1}

Sequence

Transcript Sequence

>Glyur001335s00047043.1
ATGGGAGCCTTTCCTCGTTTTGAACCAATCTCTAAATGTAACACCAAAGATAGATCAAACCAAACCGTGGCTTCAGACTTAGATGGNACCATTCTCTTGTCACGAAGTGCCTTTCCTTACTACATGCTCATTGCCTTGGAAGCTGGTAACATCCTAAGAGCACTACTCCTCTTAGCCTTTGTCCCCTTTGTATACTTCACGTACCTATTTGTCTCCGAAACCTTTGCCATCAAAACCTTGATCTTCATCACCTTCGCGGGGTTGAAGATTAAAGACATCGAGCTCGTGTCTAGGTCGGTGTTGCCGCGGTTTTATTCCGAGGATGTGAACCCAGAGACGTGGAGAGTGTTCACTTCCTTCGGAAAGCGCTACATTGTAACCGCTAGCCCGAGGGTGATGGTGGAGCCATTTGTTAAGGCCTTTTTGGGAGGTGATAAGGTGCTTGGGACTGAACTTGAGGCAACAAAGTCAGGGAGGGCTACAGGGNTTGTTAAGGAACCTGGAGTGCTTGTTGGGGAGCACAAGAGAGCAGCACTTGTCAAGGAGTTTGGGAATAACAACTTGCCTGATTTGGGACTTGGAGATNGTGTAACTGACCATGACTTCATGTCGATTTGCAAGGAAGCATACATGGTGCCAAGGAACAAGTGTGAACCATTNCCAAGAAACAAGCTTCTAAGCCCAATAATTTTCCATGAGGGTCGATTAGTTCAAAGACCAACCCCTCTAGTAGCACTATTAACCTTCCTATGGATACCAATTGGTAGCATACTCTCTATTCTAAGGGTCTACCTAAACATCCCTTTGCCAGAAAGAATTGCTTGGTACAACTACAAGCTACTAGGAATCAGGGTCATTAGAAAAGGTACCCCTCCACCACCACCAAAGAAAGGACAAAGTGGTGTTCTATTTGTTTGTAACCACAGAACAGTTTTAGACCCAGTTGTTACAGCAGTTGCATTGGGAAGAAAAATAAGCTGTGTCACATATAGTATAAGCAAGTTCACTGAAATGATTTCACCTATAAAAGCTGTGGCACTTTCAAGGGAAAGAGAGAAAGATGCAGAAAACATTAAGAAACTTCTTGAAGAAGGGGACTTAGTGATTTGCCCTGAAGGAACCACTTGTAGGGAACCTTTTCTTTTGAGGTTCAGTGCTCTTTTTGCTGAACTAACTGATAGGATTGTCCCTGTTGCTATCAACACCAAGCAAAGTGTGTTTTATGGGACTTCTGTTCGTGGGTATAAGTTGTTGGACCCTTATTTTGTGTTCATGAATCCTATGCCTATATATGAGATCACTTTCTTGAACCAGTTACCAATTGAGCTCACTTGCAAGGGAGGGAAATCTGGAATTGAAGTTGCAAATTACATTCAGAGGGTTCTTGCTGGGACTCTTGGGTTTGAGTGCACCAATTTAACAAGGAAGGATAAGTATGCTATGCTTGCAGGAACAGATGGAANTGTTCCTTCTAAGAAGAAGGCTTGA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold01335	25505	29576	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K13508	GPAT	EC:2.3.1.15	Glycerolipid metabolism	map00561
			Glycerophospholipid metabolism	map00564

Gene Ontology

biological_process
GO:0008152 metabolic process

molecular_function
GO:0016746 transferase activity, transferring acyl groups

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001335s00047043.1	PF12710.2	HAD	24	203	1.10E-08
Glyur001335s00047043.1	PF01553.16	Acyltransferase	296	399	3.80E-08

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	1.195
SRR1783600	control	1.242
SRR1783602	moderate drought stress	0.451
SRR1811619	moderate drought stress	0.433

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.000
DRR006520	Root Summer glycyrrhizin high producing strain	0.000
DRR006521	Root Winter glycyrrhizin high producing strain	0.000
DRR006522	Root Winter glycyrrhizin high producing strain	0.000
DRR006523	Root Summer glycyrrhizin low producing strain	0.073
DRR006524	Root Summer glycyrrhizin low producing strain	0.006
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.000
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.000

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	0.669
SRR2868004	Drought Stress (root)	0.195
SRR2967015	Control (root)	0.286

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	0.359
SRR9715740	Leaf	0.187
SRR9715741	Leaf	1.491
SRR9715739	Root	2.225
SRR9715742	Root	0.761
SRR9715743	Root	0.991

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.000
SRR8749028	MeJA induced 9h	0.000
SRR8749029	MeJA induced 9h	0.000
SRR8749030	Uninduced	0.000
SRR8749031	Uninduced	0.000
SRR8749032	Uninduced	0.000

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	4.903
SRR8400027	Control - Root	5.594