Gene detail

Gene detail information of Glyur001333s00028410

Functional Annotation

Database	Orthologs	Annotation
TAIR	AT3G06530.2	ARM repeat superfamily protein
NR	XP_006595739.1	PREDICTED: uncharacterized protein At3g06530-like isoform X1 [Glycine max]
Swissprot	tr\|Q9C8Z4\|HEAT1_ARATH	Uncharacterized protein At3g06530
trEMBL	tr\|K7M4K2\|K7M4K2_SOYBN	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA14G02780.2}

Sequence

Transcript Sequence

>Glyur001333s00028410.1
ATGGCAACCTCCATAGCTTCTCAGTTAGAAGCTATCAGATCTTTGGCACTAGCTGACTCTGCCCCTCTCAAGAGGCCATTCACTCGCCCTTCTATCTTGTTTGATCCCAAAGAAGCCGCTGACATCGATATTGAGACCATTTTCTCCATTGCTCTTCAAGGTTTAGAGGTTCTTATTAGCAGTGATGAGCGGTTCAGGAATTATAAGAACGATTTGTTCAGCCAAAGGAGTAAAGAGTTGGATAGAGAGTTGATGGGCATAGAACAGAACAATCAACTTAATGTCTCAATTGCTTCATACTTAAAACTGCTTTCTGGATATTTTCTTCTTCCCTCTGCACTTAAAACGCTCGAGTACCTGATACGTAGACACAAGGTTCATGTATACAACAATGAGGATTTAATTTTGTGTGCTTTGGCGTACCATGACACGCATGCATTTGTTCGAATAGTACAGATAANTGATACAAGGAATAGTAAATGGGGGTTTCTTGAGGGCGTGAAAGTCTCTGGTGCACCACCGCCTAGNATGGTCATAGTGCAGCAATGCATTCGTGATAAGGGCATATTAGATGTTCTATGCAACTATGCATCTCCATCTAAGAAGTTTCAACCTTCAAGGCATGTGATTGGCTTTTGTACTGCTGTTTTCGTTGAAGTTTTGGGCACTGTTGTGACTGTTAATGATGATCTTGTCAAGAGAATACTTCCATTTGTGGTCTCTGGTCTTCAGCCCGGTATTAAGGGGGTTTCAGATCACAAGGCCAGTTCTTTGATGTTAGTTGGTTTGCTTGGAAATAAAGCTGCATTAGCTCCGAAACTTTTGAATAGCTTGATACGTTCAGTTGCTGAGGTTGCTCGTGAGGAGGCTAAAGAGTTGATAGATCTTCATTGGTTTCGGTTATCCCTTATTGCCTTAGTCAGTCTTGTTCAGTCCCAAAATGTTGAAATACTTCCAACAAAGGCCTTAGAGATTTTNAAGGAAATAAGGGACATGGCAGGGGTTTTATCAGAGTTGTCTAAGGAGTTCAATATTGGAAAGTTTCTTCTTGTGCTTTTGGACTCCCTGATTGACTGCAGGTTAGAATTCTATGATTTTCCTTATGGAGATTTTAAGTTGTCTTCTATAAAGCTTGTGTTTCATGCTCATTATGACACGTGCAGTTCTTCNGATGAATACTGTCAGCGAGCTTTGCTGTCCTTGATAGAAAAGGTCCCCATAAATGAATGTGTTCATCATGTAGTCATCAAGACCCTATCAACTTGTGTGAAACTATCNCAAAAAGTTGGTGACTCAACATCTTTGATGTCAGCTGGATGGGCCAAAAAGATTCTGATTATTGTTAATACGAAGTATCCTTCTGAACTTCGTGGAGCAGTTCATCATTTCCTTCAGGATAACAAAGCACATTCTAAGAAAGATGACTCATTGTATAGGATTTTATGTAAGATGTTGGATGGGAATTTGGATTCATCATCTGATATCTCTGATTCAACAGTTTGGTTTGCCTTGTATCATCCAAAGGCTGATGTTCGGCGTGCTACACTGCTCGATATAAATTCTTCTGGCATCCTGAAAANTAAGGCAGTTGTTTCAGAGAGTCTTATAGACATTCAAGAGGCTATATTGAGACAACTTGATGATAAAGATCTAACANTTGTTCAAGCAGCTTTATGTGTTGATGGCTTGCCAAATGTNATAGGTTCTTCTAAGCTTCTTGAGGCACTGCAGAATGTGCTAAGAAGATGCANTGGCAAGCTGCTGTCAGTTGCTGTCGCTTGTCTAAAGAATGCCATCTCATACTTCCATGACCATTCTGATTACTTGAAGGACATTGCTGCCATGATTTTTCCGTTACTCCTTGTTATGCCACAGACACAGGGCTTGAATTTAAAAGCTCTGACATCGATATCTGGAAGTTTATCTTCAATTAACCTGAAGGTTATCAATAACATGGCTGACAATTTCATGGTCCATCCTGANGATCATATTGCTTGGTTTGTTGAAAGCTGCAATAATTCAGAACTGTCAAAGACGCTCTTCTTTTTTGTTCTATTGCAGTCTCTCTTGATAAAACCAAAAGGTGATGACTTTTCAGCACTATTTGAAAGTGTATTTCCTGTTCTGAAGGCTGAGTGGGAATCTTTAGTGACTGCTGATNATGTTCTTTTGGATCAGTTCAATTCTGAAGTGTTGGACTGGGATTGTAGTGCATTCTTTGATCATCTTTTGTATGCCAATCTCAGACCTCTAAATGCAAAAGTTATGGTTTGCATATTTTGGAGGCTGCTCGCAGCACTAATATCAGCAGTGCCTTCAGACATTCTGCTGGATGATGATGCTAAGTGGGTCAGCAAGATAAAGGATCTGTTTGTATTTTTTGCCTCCTCAAAATTCAAGCATGCATTCCGNGAACACCTTCATTTCTTAGCAGCACAGTGCAGAATATCACCTCCCCGCCTATTATCTAAGTTTTTCACAGAGGAAGGTGTTCCTGCTGCAGTCCAGGTTGAAAGTCTTCAATGCTACANATTTCTTTGTAGTCTGTCTCAAGATAGATGGCAAATTGAACTTCTAGCTGAATTTCCTTCTGTTCTTGTTCCATTGGCTGGTGATAATCAGGCTATAAGGGTTGCTTCCATGAACTGTATTGATGAGTTACGTGCATTGTGGTGTCGTATTGAACGTTCTGGCAAGAAAAACGGGAACAACCCGACATGGTTCCATTTTCTGGGAGAACTTCTATCGTTGTTGGATCAGCANAAAACACTTATATTGTCTGACAAGAATTTTCTTCCATCATTGTTTGCATCCACGCTGAGCTCATCCTGTCATAACATCTTAGTACCTCAAAATATGGAAAACAGGTTTGATCAGCCTACAAAAAAATTAATACTNGACTTCATTTTGGGTTCTGCTTTGAAATTCTCCAACTATGGGAAGCTAATGATTTTGTCCTTGCTCAAAGGACTTGGCAATGCCATTATGCATGCTGAAGTTGAGCCGTTTTTGTCTCATTTTATGAAGCAATACTATGATGACTGTGATAAGTCTTGTCAGAAATTTTCAAACATTGAAACTCAGATAATGTGCCTTTTGCTGGAGAGCTGTGTTATGTCATCTCCCTCTGGTGGAGATGATCTTCAATATCCTTTACTGAAAGCTTTGCAGTTGGATGCCATTACTTCAGATGACCCTGCCTATGTAGAGCCTTGTATCACTGTCTTGAGCAAACTTAACAGTCAATTCTACATGGGGTTGAAGAATGAAGTGAAGGAGCATTTATTTTGCGAGCTTGTGCTTTTGTGCCGTANTGCTAATGGTGATGTACAAAGTGCAACTAGAGAGGCCTTAATGCGCATAGATAAAAGTGGCATTATAAGTTCAGTGGAAAAAAAGATCACAAAGAAACAGAAACTGACAACACATCANGAAGCAGAACTTCCCACGAATGACATATGCAGAAGAGTTAATCCAGTCTNCATTCTTAGTTCCCTTCTTGATGTTTTGCTGCTGAAGAAAGACATAACAGACAGGCATTTGCTTGTAGACCCCTTATTTAAGCTTCTTAGCAAGGTATTTTCAGAAGAATGGGTAAATGGTACCATTTTCCTAGAGAAAGTGTCAAACCAACCATCACCAAGTCCGTCTGAAGCCAACAATACCATAAATCATATTCAACAGACTCTATTGATAATCCTGGAGGATATAATTATGTCCCTTCAAAGCATGGCTTCGCTAAATGAAAAAATGATGAATGAAATTAACATTAANCTACTGATAGAGTGTGCCCGGACTTCCAACGTTGTAGTCACTCGCAACCATATATTTTCTCTGCTTTCTGCTGTTACTAGAGTCTTTCCAGAAAAAGTTTTGGGGCATATACTTGATATTCTGCCAGTTATTGGAGAATCAGCTGTCACACAGATTGACAGTCATTCAAAGCATGTTTTTGAGGNTCTTATTTCTGCAATTGTTCCTTGTTGGCTGTCTAAGACAGATGATGTGGAGAAATTGCTCAAGATTTTCATAGATATATTGCCTGAAATTGTTGAGCACAGAAGGCTGTCAATTGTTTTGTATCTGTTAAGAACTTTGGGTGAGGGTAAAAGCTTGGCATCATTGNTCATCCTGCTATTCTCTTCATTAGTTTCAAGGAAAGCCGCCTATTTCCTCGATATTGAGATTCCAGATGCTTTAACATTTTATACCAGAGAGTGGGAATATAAATTTGCAGTGCAAATTTGTGAGCAGTATACTAGCATGACTTGGCTTCCTTCTTTGGTTATGCTACTTGAACAGAGTGGAAATAGAAATGTTGACCAGGCACTGTTTCTGGAGTTGTTTTTGGCAATGCAATTTTCTTTGCAAAAATTCCAAGATCCAGAATTTTTGTTTAAACTGGAATCAGGAGAAGACACCGATGTCATTCAGAGGGCACTGGGAGAGCTTATGGAGCATGTTGCTTTCCTCTTGCATCTTGTAGATGCAAGAAAAAAGCAACTGAATTTCCCCGTCATTATGAGGAAAGAGTTGAAGGAAACCATGCGTGNTGTTGTGAGGAATATAACAAGAGTCATGATACCTTCGGCATACTTTAAGAGCATAATTAAGTTGCTCCACCATTCAGATAAAAATGTTGGAAAAAAGGCTCTTGGGCTGCTATGTGAGGATGCAAGAAATCATAAAAAAGTGAGCTTAACGATTAAAGACAGCAAAGGTTCAAGGTCAAGTCCAAATTTTCTTTGGCATCACATGGATGAAAGTTCTCAAGAATCACTTAGTAAAATGTGTTTAGAAATTATTCAAGTACTTGATGATTCATCAAATACCTCCTTGAAAGTGGCGGCAGTNTCAGCATTAGAAGTTCTGGCTGAAAGGTTCCCTACGAATAGTTCCATCTTTAGTGTATGCCTTGGATCTGTTACAAGATGTATTACTTCTCATAACTTGGCTGTGACTTCTAGCTGCCTTCGGACAACCGCTGCCTTGATCAATGTTCTAGGTCCAAAAGCACTGGCTGAACTTCCTCAGATTATGGACAATGTAATGAAGTCATCTCGTCTTGTATTGTCTAATCTGGATAAGAAACCACAAACTAAAGATATTTTATCAGCCCCAAATGAATCCCATTTATTTTCTGTTCTCATCANTTTGGAGGCAGTTGTGGACAAGCTTGGTGGATTTCTAAATCCATATCTCACAAATATCATGGAGCTTCTGGTGCTTCATCCTGAATATGTTGCAGGAATGGATGCTAAGGTGGAATCTAGAGCTCATGGAGTACGAAAGCTGCTTGCTGAAAAAATTCCTGTTCGGCTTGCCCTTCCGCCATTGTTAAAATTATACCCTGTTGCAGTNGATGCCGGGGACAAAAGCTTAACAATTGTGTTTGATATGTTGGCAATGTTGATTGGTACGATGGACAGATCATCTATTGTGGCANTCCATGAAAAGATTTTTGATATTTGCTTGGTTGCTCTNGATCTTCGCCGACAAAGTCCTCTTTCGATCCAAAACATTGATGTAGTGGAAAAAGGTGTGATGAATGCCATGATTGCTCTGACCNTAAAACTTACTGAGAGCATGTTCAAGCCTCTTTTCATAAAGAGTATTGAGTGGGCAGAATCCGAAGTGGATGAAACTGTATCTGCNGGAAGCATCGATAGGGCCATATCCTTTTATGGCATGGTAAATAAGNTGGCAGAGAACCATCGGTCGTTGTTTGTTCCTTACTTCAAACACTTGCTTGGTAGCTGTGTTCATCATCTTAGTAGTGGTGGNGACGTGAAAGTGTCTAGTCTGAGTCACAAGAAAAAGAAGGCTAAGATCCTGGACGATATGTTGTTGAAACCTATTGTTTCACAACTTGTCGTAGATCCACCCAGTTTGCTAGATGACAGCATGAATATACTGAGCGTGAAGGAAGTTGATGNCCTACTGGTTGTGTGTGNCGGTCAAATGGCGGTGACTGCTGGATCCGACCTTCTGTGGAAACCTTTGAACCACGAGGTTTTGATGCAGACACGTAGTGAAAAGACACGAGCTAGAATATTGGGCTTGAGAATTGTTAAATATCTTGTAGATAACTTGAAGGAAGAATATTTAGTGTTCCTGGCTGAAACAATCCCCTTCCTCGGTGAACTGCTTGAGGATGTGGAGCTTTCAGTTAAATCTCTTGCTCAGGAAATTCTGCAGGAAATGGAGTCTCTGAGTGGGGAAAGCCTTCGGCAATACCTATGA

Protein Sequence

>Glyur001333s00028410.1
MATSIASQLEAIRSLALADSAPLKRPFTRPSILFDPKEAADIDIETIFSIALQGLEVLISSDERFRNYKNDLFSQRSKELDRELMGIEQNNQLNVSIASYLKLLSGYFLLPSALKTLEYLIRRHKVHVYNNEDLILCALAYHDTHAFVRIVQIXDTRNSKWGFLEGVKVSGAPPPXMVIVQQCIRDKGILDVLCNYASPSKKFQPSRHVIGFCTAVFVEVLGTVVTVNDDLVKRILPFVVSGLQPGIKGVSDHKASSLMLVGLLGNKAALAPKLLNSLIRSVAEVAREEAKELIDLHWFRLSLIALVSLVQSQNVEILPTKALEIXKEIRDMAGVLSELSKEFNIGKFLLVLLDSLIDCRLEFYDFPYGDFKLSSIKLVFHAHYDTCSSSDEYCQRALLSLIEKVPINECVHHVVIKTLSTCVKLSQKVGDSTSLMSAGWAKKILIIVNTKYPSELRGAVHHFLQDNKAHSKKDDSLYRILCKMLDGNLDSSSDISDSTVWFALYHPKADVRRATLLDINSSGILKXKAVVSESLIDIQEAILRQLDDKDLTXVQAALCVDGLPNVIGSSKLLEALQNVLRRCXGKLLSVAVACLKNAISYFHDHSDYLKDIAAMIFPLLLVMPQTQGLNLKALTSISGSLSSINLKVINNMADNFMVHPXDHIAWFVESCNNSELSKTLFFFVLLQSLLIKPKGDDFSALFESVFPVLKAEWESLVTADXVLLDQFNSEVLDWDCSAFFDHLLYANLRPLNAKVMVCIFWRLLAALISAVPSDILLDDDAKWVSKIKDLFVFFASSKFKHAFREHLHFLAAQCRISPPRLLSKFFTEEGVPAAVQVESLQCYXFLCSLSQDRWQIELLAEFPSVLVPLAGDNQAIRVASMNCIDELRALWCRIERSGKKNGNNPTWFHFLGELLSLLDQXKTLILSDKNFLPSLFASTLSSSCHNILVPQNMENRFDQPTKKLILDFILGSALKFSNYGKLMILSLLKGLGNAIMHAEVEPFLSHFMKQYYDDCDKSCQKFSNIETQIMCLLLESCVMSSPSGGDDLQYPLLKALQLDAITSDDPAYVEPCITVLSKLNSQFYMGLKNEVKEHLFCELVLLCRXANGDVQSATREALMRIDKSGIISSVEKKITKKQKLTTHXEAELPTNDICRRVNPVXILSSLLDVLLLKKDITDRHLLVDPLFKLLSKVFSEEWVNGTIFLEKVSNQPSPSPSEANNTINHIQQTLLIILEDIIMSLQSMASLNEKMMNEINIXLLIECARTSNVVVTRNHIFSLLSAVTRVFPEKVLGHILDILPVIGESAVTQIDSHSKHVFEXLISAIVPCWLSKTDDVEKLLKIFIDILPEIVEHRRLSIVLYLLRTLGEGKSLASLXILLFSSLVSRKAAYFLDIEIPDALTFYTREWEYKFAVQICEQYTSMTWLPSLVMLLEQSGNRNVDQALFLELFLAMQFSLQKFQDPEFLFKLESGEDTDVIQRALGELMEHVAFLLHLVDARKKQLNFPVIMRKELKETMRXVVRNITRVMIPSAYFKSIIKLLHHSDKNVGKKALGLLCEDARNHKKVSLTIKDSKGSRSSPNFLWHHMDESSQESLSKMCLEIIQVLDDSSNTSLKVAAVSALEVLAERFPTNSSIFSVCLGSVTRCITSHNLAVTSSCLRTTAALINVLGPKALAELPQIMDNVMKSSRLVLSNLDKKPQTKDILSAPNESHLFSVLIXLEAVVDKLGGFLNPYLTNIMELLVLHPEYVAGMDAKVESRAHGVRKLLAEKIPVRLALPPLLKLYPVAVDAGDKSLTIVFDMLAMLIGTMDRSSIVAXHEKIFDICLVALDLRRQSPLSIQNIDVVEKGVMNAMIALTXKLTESMFKPLFIKSIEWAESEVDETVSAGSIDRAISFYGMVNKXAENHRSLFVPYFKHLLGSCVHHLSSGGDVKVSSLSHKKKKAKILDDMLLKPIVSQLVVDPPSLLDDSMNILSVKEVDXLLVVCXGQMAVTAGSDLLWKPLNHEVLMQTRSEKTRARILGLRIVKYLVDNLKEEYLVFLAETIPFLGELLEDVELSVKSLAQEILQEMESLSGESLRQYL

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold01333	44013	63010	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0005488 binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001333s00028410.1	PF12397.3	U3snoRNP10	229	357	4.90E-24
Glyur001333s00028410.1	PF08146.7	BP28CT	1810	1951	5.00E-34

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	10.645
SRR1783600	control	10.798
SRR1783602	moderate drought stress	13.931
SRR1811619	moderate drought stress	13.792

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	12.456
DRR006520	Root Summer glycyrrhizin high producing strain	12.100
DRR006521	Root Winter glycyrrhizin high producing strain	6.347
DRR006522	Root Winter glycyrrhizin high producing strain	6.130
DRR006523	Root Summer glycyrrhizin low producing strain	15.922
DRR006524	Root Summer glycyrrhizin low producing strain	15.557
DRR006525	Leaf Summer glycyrrhizin high producing strain	3.732
DRR006526	Leaf Summer glycyrrhizin high producing strain	3.754

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	18.140
SRR2868004	Drought Stress (root)	14.729
SRR2967015	Control (root)	15.705

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	3.427
SRR9715740	Leaf	6.097
SRR9715741	Leaf	2.779
SRR9715739	Root	1.482
SRR9715742	Root	15.004
SRR9715743	Root	12.526

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	24.125
SRR8749028	MeJA induced 9h	16.141
SRR8749029	MeJA induced 9h	15.055
SRR8749030	Uninduced	1.230
SRR8749031	Uninduced	6.992
SRR8749032	Uninduced	6.181

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	16.373
SRR8400027	Control - Root	14.135