Gene detail information of Glyur001333s00028408 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G54880.1 | 4.00E-72 | DTW domain-containing protein |
| NR | XP_003545131.1 | 4.18E-180 | PREDICTED: uncharacterized protein LOC100797499 [Glycine max] |
| COG | YP_005091512.1 | 1.00E-12 | DTW domain-containing protein [Oceanimonas sp. GK1] |
| trEMBL | tr|K7M4K3|K7M4K3_SOYBN | 2.00E-180 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA14G02800.2} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold01333 | 37199 | 38410 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur001333s00028408.1 | PF03942.10 | DTW | 41 | 109 | 1.30E-11 |
| Glyur001333s00028408.1 | PF03942.10 | DTW | 272 | 387 | 3.20E-20 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 3.479 |
| SRR1783600 | control | 3.612 |
| SRR1783602 | moderate drought stress | 2.501 |
| SRR1811619 | moderate drought stress | 2.450 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 7.594 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 11.067 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.773 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.836 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 5.284 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 4.548 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 3.754 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 3.799 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 2.765 |
| SRR2868004 | Drought Stress (root) | 3.186 |
| SRR2967015 | Control (root) | 3.133 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 11.011 |
| SRR9715740 | Leaf | 12.453 |
| SRR9715741 | Leaf | 10.602 |
| SRR9715739 | Root | 2.403 |
| SRR9715742 | Root | 8.982 |
| SRR9715743 | Root | 4.393 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 3.858 |
| SRR8749028 | MeJA induced 9h | 4.477 |
| SRR8749029 | MeJA induced 9h | 1.250 |
| SRR8749030 | Uninduced | 1.910 |
| SRR8749031 | Uninduced | 1.890 |
| SRR8749032 | Uninduced | 1.337 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 4.251 |
| SRR8400027 | Control - Root | 5.800 |