Gene detail

Gene detail information of Glyur001333s00028407

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G72840.2	5.00E-34	Disease resistance protein (TIR-NBS-LRR class)
NR	XP_003617564.1	3.43E-179	TIR-similar-domain-containing protein TSDC [Medicago truncatula]
COG	YP_007069110.1	2.00E-07	sulfatase-modifying factor protein [Calothrix sp. PCC 7507]
Swissprot	tr\|Q40392\|TMVRN_NICGU	9.00E-40	TMV resistance protein N
trEMBL	tr\|G7K3J1\|G7K3J1_MEDTR	2.00E-179	TIR-like domain protein TSDC protein {ECO:0000313\|EMBL:AET00523.2}

Sequence

Transcript Sequence

>Glyur001333s00028407.1
ATGCGTGATAAAGTGTTAGATACAAATCCGGGACTAGCATGTGGGTTTCGTGTTGGCAAAATCATTAAAGACATGGAGAACGAAAAGAAGAAGTTGATGTCAAATCGAGATCTTGTGCAGGAAAAAGTTGAAGCAACTGATAAGACTGAAAGAGTCGAGGATGTTGTTTTTGAGTGGCTAAAAGAATTGGAGAAACTCATAGAAAGAGGAGGAGAATCTGAAAAAAGAGATTCCCCTTCCCCGCCGCAATCATATGGGATGTATAAAGAAATGCTAAAGAAAATAAAGGCTCTGAATGCCAAGTGTGAATTTGGGCCATTTTCCAGCCCAATTCCAGGTTTGGAGTACTTCTCTTTCGGAAATTTTGTATGTTTTGAACCTACAAAACTGGATTCAGATCAACTTTTGGAGGCACTGCAAGATGATAATTGCTATATAACTGGATTGTATGGGAAGCGGGGCTCAGGTAAAACAAAATTGGTAAAAGCAGTGGGTGAGAAAGCCAAGTATTTGAAGATTTTTGATGCAGTTGTATTTGCCACTGTGTCTCAGAGCCAAAATGACAGGATCAGGAGGATTCAAGATGAAATTGCTGACTCTATGGATCGGATTCTGGTGATCTTGGATGATGTTCGGGCAAAGCTTGAGCTGGAGGATATAGGTATTCCTTGTAATGGTAAACGGTGCAAGGAAGCTTGGACTTTGCTCAAAATACATTCAGGCATAGAGGATCATGAGTCCTCATCTGAACTGTTAACATCATTAGACAGTCTTAGACATTCACTGGCCCAATATCATATTTTCCTCAGTTTTAGAGGACAAGATACTCGCTACTCTTTCACGGGTTCTCTCTATCATGCCCTGTGCCAAGGAGGGTTCAAGACCTTCATGGATGATGGGGGATTGCACATTGGAGACCAAATTTCACCATCTCTTGTTAAAGCAATTGAAGCATCAAGGCTCTCGATTGTTGTTTTATCTGAAAACTATGCAAGTTCCTCCTGGTGTCTTGATGAACTTGTCATGATTCTGGAGTGTATGAAAACCAAGAAGCAATTGGTTTTGCCAATCTTTTACAAAGTGGAACCATCAGACATAAGGCACCAGAGGAATAGTTATGAGACAGCCATGGCTGAACATGAAAACAGGTTTGGAAGTGACTCTGAGAAAGTAAAGAAATGGAGGTCAGCCTTGTTTGAAGTTTCTCAGTTGTCTGGAAAGACTTATATAACCGGGTACGAATATGAATTTATCCAAAAGATCGTGGAAGATGCCAATAATATTAAAAATCGTTTGTATATAAGAGGCATGGAGATGGACTAG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold01333	33164	35305	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0007165 signal transduction

molecular_function

GO:0005515 protein binding

GO:0043531 ADP binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001333s00028407.1	PF00931.17	NB-ARC	133	201	1.20E-06
Glyur001333s00028407.1	PF01582.15	TIR	268	398	6.70E-35

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	1.275
SRR1783600	control	1.183
SRR1783602	moderate drought stress	1.025
SRR1811619	moderate drought stress	1.126

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.439
DRR006520	Root Summer glycyrrhizin high producing strain	0.405
DRR006521	Root Winter glycyrrhizin high producing strain	0.000
DRR006522	Root Winter glycyrrhizin high producing strain	0.000
DRR006523	Root Summer glycyrrhizin low producing strain	0.226
DRR006524	Root Summer glycyrrhizin low producing strain	0.115
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.407
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.443

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	13.172
SRR2868004	Drought Stress (root)	11.652
SRR2967015	Control (root)	12.759

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	1.116
SRR9715740	Leaf	0.288
SRR9715741	Leaf	0.930
SRR9715739	Root	0.329
SRR9715742	Root	2.066
SRR9715743	Root	1.929

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	3.117
SRR8749028	MeJA induced 9h	1.666
SRR8749029	MeJA induced 9h	1.457
SRR8749030	Uninduced	1.465
SRR8749031	Uninduced	0.481
SRR8749032	Uninduced	0.718

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	15.632
SRR8400027	Control - Root	12.920