Gene detail

Gene detail information of Glyur001333s00028400

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT2G18330.1	0	AAA-type ATPase family protein
NR	XP_007156952.1	0	hypothetical protein PHAVU_002G031200g [Phaseolus vulgaris]
COG	YP_006441152.1	8.00E-20	AAA ATPase central domain protein [Turneriella parva DSM 21527]
Swissprot	tr\|Q9SCN8\|CD48D_ARATH	1.00E-19	Cell division control protein 48 homolog D
trEMBL	tr\|V7CJ53\|V7CJ53_PHAVU	0	Uncharacterized protein {ECO:0000313\|EMBL:ESW28946.1}

Sequence

Transcript Sequence

>Glyur001333s00028400.1
CTCTTGTTCCATTTTCCGTTTAAACCCTAGCAAGCAGAGGGGTTTAAGCTCGCGCCACGCAGTGAACCGCGAAGCTTCTTCATGGTCCATCTCGAAGGCGNATTCTAAGCCATGGCCGCTGCTAGATTAACAACATGCGTGGCGGTAACTGCCGCTGCGGTGGCTTCCATGTCCACGCGCTCCGATCGCGCGNACGCGGACTCTCCCTTTCGGTTCCCTCTGTTCTCTTCTTCACCTTCCAATTCTCCACCGCCGACGGACCAGGCATCTGACACCAAGTCGGAGCCTCCGCCTCCTGATGAACCCAACAAGTCCGGTTTTGATCCCGAATCGTTAGAAAGAGGTGCCAAAGCTCTCCGTGAAATCAATATTTCTCCCTATGCTAAACAGGTGTTTGATTTAATGCGAAANCAGGAACAAACTCGCCTTGCTGAGCTAGATGCTGAAAAAGTTCATTACGAACTTATTCAGTCTCAAGGGGATATTGAAAGGCAGCGGAAAATGGCTGAAGAACAACGGAATCTAATACAAGAGCAAGCCCAGAGACAGGCNCAGGTGCTGCGTTATGAAGATGAATTGGCAAGGAAAAGAATGCAGGCAGATCATGAAGCTCAAAGGCGACATAATGTTGAATTGGTCAAGATGCAAGAGGAATCTTCTGTAAGGAAGGAGCGGGCAAGACAGGCTACTGAAGAACAGATTCAATCTCAGCAGCGTCAGACTGAGAGAGAGAGAGCTGAAATAGAAAGAGAAACCATTAGAGTTAAGGCAATGGCAGAGGCTGAAGGCCGAGCTCATGAAGCAAAATTGACTGAGGATCATAACAGGAGAATGCTNATAGAACGAATGCAAGGTGAAAGAGATAAATGGCTTGCGGCAATCAACACAACTTTTAGTCATATTGAAGGTGGTCTAAGGGTCTTATTAACCGATAGGGACAAATTGCTTATGACTGTTGGAGGAGCTACTGCATTAGCTGCAGGAGTATATACGACAAGAGAAGGTGCAAAAGTTACATGGGGCTATATTAATCGGATTTTGGGGCAGCCATCATTGATNCGGGAATCATCCATGGCAAAGTTTCCAGGGTCAAGGATCATGTCTCAAGCAAAAAATAAAGTTTTAAATTACAGTACCTTGGCCAGGGCACAAAAGCCTGTTGGGAATAAAAATGGTCTTGAAAATGTTATCCTTCATCCATCATTGCAGAGAAGAATAGAGCATCTTGCACGNGCAACATCAAATACTAAGGCCCATCAGGCACCATTTCGTAACATGCTTTTTTATGGGCCTCCTGGGACTGGTAAAACCATGGTTGCAAGGGAAATAGCTAGAAAGTCGGGTTTGGATTATGCCATGATGACNGGAGGAGATGTTGCACCTCTTGGCCCACAGGCTGTTACCAAAATTCATGAGATATTTGATTGGGCCAAGAAATCTAGAAAAGGCCTATTGCTTTTTATTGATGAGGCAGATGCTTTCCTTTGCGAGCGTAACAGCACACACATGAGTGAAGCTCAAAGAAGTGCTCTAAATGCATTGCTTTTCAGAACTGGTGATCAATCTAGAGACATTGTCCTAGTCCTTGCCACAAACAGACCAGGAGATCTTGATAGTGCAGTTACTGATCGCATTGATGAAGTGATTGAATTCCCACTTCCAGGAGAGGAGGAACGCCTAAAGTTACTGAAGCTCTATTTGAACAAGTATCTAGGGGATGAAAATAAGGGTTCCAAGGGTGGCTTCTCGCTGAAGAAGCAGCCCCAAAAGATTACCATAAAAGATTTATCAGAAGATGTGTTGAGAGAGGCTGCCAAGAAAACAGAGGGATTTTCTGGCCGTGAGATAGCCAAACTCATGGCCAGCATCCAAGCTGCTGTCTATGGGCGCCCTGACTGCACCTTGGATTCCCAGCTGTTCAAAGAAATTGTAGATTACAAGGTGGTGGAACATCATCAGCGATTAAAACTGGCNGCTGAAGGGGGCCTTCCTGACCAAATGCAACAACTCGTTTGAGTTTTAATCTGAATTCCCACTAATACCTTGCTCTGGGAGTTTTCTTNTTGATGTTATTATTCTTCATCTTGTTACTTGTGCCAGTTTTTGTGGCCGATGAAGCAAATTCTTTCTAAACTTTGCCTAGATGCGTTTTCTGAGCCAAAATTTACAGGGCATTATTGCTTTATTAGTTATTAGGAATGANAGGCTTTAATGATTTGGAAGCAGCATTCCAGTAGAACCTGTTCTCTTCATGCTATGGANCAAGGAGACAGGTATTGAGAGCTTAGAAGTCAATTTACCTTGATTATTAAATTCATAAAATATACTCAAAAGTTGTAATTTAAATTTGCATTTGTTGTGAATTTGAGTTCTGTTGAATTCC

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold01333	12398	18051	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0005524 ATP binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001333s00028400.1	PF12037.3	DUF3523	48	317	7.00E-107
Glyur001333s00028400.1	PF00004.24	AAA	389	516	1.20E-25

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	12.961
SRR1783600	control	13.039
SRR1783602	moderate drought stress	9.958
SRR1811619	moderate drought stress	9.941

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	16.785
DRR006520	Root Summer glycyrrhizin high producing strain	16.488
DRR006521	Root Winter glycyrrhizin high producing strain	11.788
DRR006522	Root Winter glycyrrhizin high producing strain	11.187
DRR006523	Root Summer glycyrrhizin low producing strain	15.259
DRR006524	Root Summer glycyrrhizin low producing strain	15.871
DRR006525	Leaf Summer glycyrrhizin high producing strain	7.749
DRR006526	Leaf Summer glycyrrhizin high producing strain	7.515

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	21.215
SRR2868004	Drought Stress (root)	15.872
SRR2967015	Control (root)	14.558

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	4.555
SRR9715740	Leaf	5.156
SRR9715741	Leaf	3.339
SRR9715739	Root	1.170
SRR9715742	Root	9.633
SRR9715743	Root	7.790

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	20.916
SRR8749028	MeJA induced 9h	20.943
SRR8749029	MeJA induced 9h	13.956
SRR8749030	Uninduced	1.785
SRR8749031	Uninduced	1.698
SRR8749032	Uninduced	2.286

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	14.391
SRR8400027	Control - Root	12.806