Gene detail

Gene detail information of Glyur001333s00028397.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT2G18350.1	8.00E-29	homeobox protein 24
NR	XP_003537589.1	3.19E-106	PREDICTED: ZF-HD homeobox protein At4g24660-like [Glycine max]
Swissprot	tr\|Q9ZPW7\|ZHD6_ARATH	2.00E-65	Zinc-finger homeodomain protein 6
trEMBL	tr\|C6TDZ3\|C6TDZ3_SOYBN	2.00E-106	Putative uncharacterized protein {ECO:0000313\|EMBL:ACU20045.1}

Sequence

Transcript Sequence

>Glyur001333s00028397.1
ATGAGAAGAGGGCAACAAGNCAATAAGGAAATAAAGATGGCAACCAGCACTTTAGGTTCTTATAATCTTCCCACTAGAGATTCCTCTTCTTCTTCTCCAACTCTAGCACAAAGAAGTAGTGATCTTCAACCTTCTCAAGCTCAAGCTTCTCAAACATTAATCTTCAACAACGATCCACCTCATGTTTTTTATCCACCTCAACACCACCAATCCCAGNTGAGACCCACCACCACAGATCCAGATCTAACTACTACCTCATCCCCAATTGCCACAACAACAACAAGGACAGTTACAGCTACGGTTATAGCAGCAGCAGCACCACCTAGTACCAGAGTTTGGTACCGAGAATGTCAGAGGAACCACGCGGCAAGCATGGGGAGCCACGTGGTTGATGGGTGTGGCGAGTTCATGCCAAGCGGCGTAGAAGGTACCCCAGAGTCACTAAAGTGCGCCGCTTGTGAATGCCACCGCAATTTCCATCGAAAAGAGGTTGAAGGGGAACAACAACAACATCAGCAACACGTTCCCAATTATCACCACCACACTACCTATTATCATCCCAATAAGCACAATAGCAACGGTCATCACCTTCAATTCCATNCACCCCCTTCTTCTTCTCATCATCATAGATTCTCGCACGTGCTTCCCACTACCCCTACGGTGGGACCAGTTGTTCCACCGTTGATGATGGCCTTTGGAGGAGGCCCTACTGCTGAGTCCTCTAGTGAAGATCTCAACTTGTTCCAGTGTAACGCGGGTGCACAGGCGCTATCCGTGCAGACGCAGGTGGAGCCACTTTCGAAGAAGAGGTTCAGGACCAAATTCTCACAGCAGCAGAAAGAGAGGATGATGGAGTTTGCTGAGAAGCTTGGGTGGAGGATCCAGAAACATGATGACCAGGAAGTTCAGCAGTTTTGTTCCCAAGTGGGTATCAAGAGACAGGTTTTCAAGGTTTGGATGCACAATAACAAACAAGCAATGAAGAAACAACAAATGTAA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold01333	3552	4550	+

Gene family

Gene family	subfamily
Transcription Factors Family	zf-HD

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0003677 DNA binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001333s00028397.1	PF04770.7	ZF-HD_dimer	111	167	1.60E-30

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.073
SRR1783600	control	0.064
SRR1783602	moderate drought stress	0.711
SRR1811619	moderate drought stress	0.682

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	3.169
DRR006520	Root Summer glycyrrhizin high producing strain	3.453
DRR006521	Root Winter glycyrrhizin high producing strain	3.691
DRR006522	Root Winter glycyrrhizin high producing strain	3.155
DRR006523	Root Summer glycyrrhizin low producing strain	3.706
DRR006524	Root Summer glycyrrhizin low producing strain	3.487
DRR006525	Leaf Summer glycyrrhizin high producing strain	7.000
DRR006526	Leaf Summer glycyrrhizin high producing strain	6.666

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	0.121
SRR2868004	Drought Stress (root)	0.287
SRR2967015	Control (root)	0.137

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	5.119
SRR9715740	Leaf	10.265
SRR9715741	Leaf	8.357
SRR9715739	Root	0.000
SRR9715742	Root	0.434
SRR9715743	Root	0.817

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.000
SRR8749028	MeJA induced 9h	0.000
SRR8749029	MeJA induced 9h	0.000
SRR8749030	Uninduced	0.000
SRR8749031	Uninduced	0.000
SRR8749032	Uninduced	0.000

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	1.247
SRR8400027	Control - Root	1.873