Gene detail information of Glyur001332s00034637 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G04240.1 | 6.00E-08 | Zinc finger (C2H2 type) family protein / transcription factor jumonji (jmj) family protein |
| NR | XP_010112224.1 | 4.19E-09 | putative lysine-specific demethylase ELF6 [Morus notabilis] |
| Swissprot | tr|Q10RP4|SE14_ORYSJ | 1.00E-09 | Lysine-specific demethylase SE14 |
| trEMBL | tr|F6HNF0|F6HNF0_VITVI | 6.00E-10 | Putative uncharacterized protein {ECO:0000313|EMBL:CCB56169.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold01332 | 9368 | 12587 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| -- | -- | -- | -- | -- | -- |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 1.842 |
| SRR1783600 | control | 2.272 |
| SRR1783602 | moderate drought stress | 2.635 |
| SRR1811619 | moderate drought stress | 2.521 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.539 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.983 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.417 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.359 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.346 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.078 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.631 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.404 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 1.767 |
| SRR2868004 | Drought Stress (root) | 2.387 |
| SRR2967015 | Control (root) | 2.582 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 2.282 |
| SRR9715740 | Leaf | 1.011 |
| SRR9715741 | Leaf | 1.763 |
| SRR9715739 | Root | 0.391 |
| SRR9715742 | Root | 0.754 |
| SRR9715743 | Root | 0.674 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 2.384 |
| SRR8749028 | MeJA induced 9h | 3.247 |
| SRR8749029 | MeJA induced 9h | 2.814 |
| SRR8749030 | Uninduced | 2.183 |
| SRR8749031 | Uninduced | 7.735 |
| SRR8749032 | Uninduced | 5.566 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 3.108 |
| SRR8400027 | Control - Root | 2.165 |