Gene detail

Gene detail information of Glyur001331s00031407

Functional Annotation

Database	Orthologs	Annotation
TAIR	AT1G13170.1	OSBP(oxysterol binding protein)-related protein 1D
NR	XP_004502376.1	PREDICTED: oxysterol-binding protein-related protein 1D-like [Cicer arietinum]
Swissprot	tr\|Q9SAF0\|ORP1D_ARATH	Oxysterol-binding protein-related protein 1D
trEMBL	tr\|G7J2L8\|G7J2L8_MEDTR	OSBP(Oxysterol-binding protein)-related protein 1C {ECO:0000313\|EMBL:AES72125.1}

Sequence

Transcript Sequence

>Glyur001331s00031407.1
NAAACACAAACACACACTGCCATGTACTACTGACTGACTAGTGCCTTAAATGGATGTGTGTGCCCAGTGGTTCAGCTCTTTATAGCCTGCCACACCAACAACTGTACCTCACTCCCCTTTTCCATCTATATCTACATTCACTTCACTACCTTCCCATTCCGATCTCAACTCAACTCAAACTCATTTATGTTTCCTCCTATTTATTTATTTACAATATAACCGTTTCGTTTCGTTTCGTTTCGAATCTGTTACAACTGAATCTCCGATTCCGATCAGTTTCAATCTCAATCCAAATCCAACCGTCACGCGAATCGATCGAAGNTTTTTCGTTTCGGTGCTTCTCTAACTCGATCATGTCTTGTTGTGTGTGTTGGTTTGAGTGAAGGATGAATCCTCTGTGCTGCATTGCTCCGGTTTCGATCGATCGGGACCGAGCAAACCCTGTGGTTGCGAAATCGACAGGTCAGTGTCAGTTAGGGCTCGATTCGTCNATCAGAACAGTGAACTGTGCTTCCAAGTCGAGTTTCTCCACTCAGGACTCATCGCACGGCGGCGATTCCGTTAAGGCCTCCTCCGCGGCGTTGANTCATCATGACGATGAGGACGCGGTCCACGAGCCTCGGGATTCCAAGGTGTTCGCCGGCGGCAATGGCGTCGGCGGAGGAGGAGTGGCCGGGAGTGTGGCTGGGATACTGTACAAGTGGGTGAATTACGGTAAGGGTTGGAGGTCTAGGTGGTTCGTGCTNGAAGATGGTGTGCTTTCGTATTATAAGATTCATGGACCGGATAAGATCTTGATGAGTCCTGCTAGGGATAGGAGTGTGAGGGTGATTGGTGAGGAGTCATCTAAGTATATGAAGAAGGCGAATTGGAACGTGAATCGAGCCAATGGAGGAGCTGGAGGAGGAGGAGCCACCAAACAATGCAAGCCCTTCGGTGAGATACATTTGAAGGTTTCTTCAGTTCGATCCAGCAAATCTGATGACAAGCGCCTTTCCATATTTACTGGGACAAAAACTCTTCACTTGAGGTGTGTATCTAGAGAAGACAGAGCCATGTGGATTGAGGCCCTGCAGTCTGCGAAAGATCTTTTTCCTAGAGCTTTAACAAGTAGCGATCTTGCAACTTCAGAAGATATTGTAGTTTCAACAGAAAAGCTGCGATCACGATTGTCACAGGAAGGCATAAGTGAAACAATCATTAGTGACTGCGAGTCTATTATGCTCTCTGAAGTCTCTTATCTTCAAGGCAAGTTGAAGTTTCTTCAGCAGAAACATGTTATGTTGTTGGACACCTTAAAACAACTAGAGACGGAGAAAATAGAGTTGGAAACTACTGTAGTAGATGAAACAAAGGAACGTGAGTCATATTGTGGACAAGGGAATAGAAGATTTAGTGATTTCTATTCTGTTATGTCGGAGGGCAGTGCTACTGATTCAGTAGCAGATAATGAAAGTCAAGATGGAGCAGATGCTGAAACAGATGATGACGATGGAACATATTTTGATACAAACGAGATTTTGTATTCAGATGNCTTAAGAAGTGCTTCCTATCGAAGTAGGGAAGGTATGGGAAATGCCAGTATATATGACAGAGATTGTATTCTTCATGATGGTTTGCATGGGTTTGAGAAGGAGATCAAAGATATAAGTTATCCATATGTCAAAAGAAGGGATAACTTACCAGAGCCAAAAGAGAAGGAGAGGCCTGTTGGCTTGTGGTCAATTATTAAAGACAATATCGGGAAGGATCTTTCTGGAGTTTGTCTCCCTGTTTATTTTAATGAACCACTCTCTTCATTGCAAAAGTGTTTTGAAGACCTNGAGTACTCATACCTGGTTGATAGAGCATTGGAGTGGGGAAAGCAGGGGAATGATTTGATGAGAATTCTAAATATTGCAGCATTTGCTGTGTCTGGCTATGCGTCTACTGAAGGTCGACANTGTAAACCTTTCAATCCTCTGCTTGGGGAGACTTATGAAGCTGACTATCCAGATAAAGGACTTAGATTCTTTTCTGAGAAGGTTAGTCATCATCCAATGATTGTTGCTTGTCACTGTGAGGGAAAAGGATGGAAGTTCTGGGCAGACTCCAATTTGAAAGGAAAATTCTGGGGGCGTTCTATTCAGCTAGATCCTGTGGGTGTCCTCACCCTACAGTTTGAGGATGGTGAAACATTTCAGTGGAGCAAGGTCACCACTTCCATATACAATATCATACTAGGTAAAATTTATTGTGACCACTATGGTACTATGCACATCAAGGGCAGCGGAAACTACTCTTGCAAACTGAAGTTCAAAGAGCAATCTATCATAGACCGAAATCCACATCAGGTCCATGGTTTTGTCCAAGACAACAGAACTGGAGAGAAGGTAGCAATGTTAATTGGGAAGTGGGATGAAGCAATGTACTATGTACTTGGGGATCCAACTACAAAGCCAAAAGGTTATGATCCGATGACAGAGGCTGCATTATTGTGGGAAAGGGACAACTATGTTCCCAAGACGAGATACAACCTCTCTCCCTTTGCAATTTCATTGAATGAAATAATGCCTGGCTTATCAGAGAAGTTGCCTCCAACTGATTCGAGGTTGAGACCAGATCAGAGACATTTAGAAAATGGAGAATATGAGTTGGCAAATGCAGAGAAACTAAGACTTGAACAGTTGCAGAGACAGGCAAGAAAATTGCAAGAAAGAGGATGGCAACCCAGATGGTTTAAGAAGGATGAGGATGGTTGTTACCGATATATGGGTGGCTATTGGGAAGCAAGAGAAAAGGATAATTGGGATGGAATCCCTGATGTATTTGGTCAGACTTGTGATTTGCCTTCATGTTCCGAAGAGATTGTACCCTACTGAGAACTGGTTTTCCTCTTCATAGCCGTTGAAAATATCATGTTTTTGCTAAATGTCAATTTGGATGTAGGTTGTAAGTTATTAAAAAAAAAAATCCTTCCATGAAGTGTTGGCTTCCTAGAAATTTCTTCTGGCTACGCATTTTGGGCAATCTATCTATTATCTATACAAGTGACCCGCGAATTTATAGGTTGATCCTTCATTTCTTTATATGCCATATTTTTGCCATATCATATTTATCACGAGATGTCATTCTCTATTACCTATTTTTTTCATT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold01331	28538	35557	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

Not hits found.

Not hits found.

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001331s00031407.1	PF15413.1	PH_11	100	232	1.40E-23
Glyur001331s00031407.1	PF01237.13	Oxysterol_BP	444	794	1.50E-113

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	17.261
SRR1783600	control	17.492
SRR1783602	moderate drought stress	15.340
SRR1811619	moderate drought stress	15.119

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	25.900
DRR006520	Root Summer glycyrrhizin high producing strain	25.441
DRR006521	Root Winter glycyrrhizin high producing strain	5.264
DRR006522	Root Winter glycyrrhizin high producing strain	5.116
DRR006523	Root Summer glycyrrhizin low producing strain	18.437
DRR006524	Root Summer glycyrrhizin low producing strain	18.426
DRR006525	Leaf Summer glycyrrhizin high producing strain	13.252
DRR006526	Leaf Summer glycyrrhizin high producing strain	13.442

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	32.684
SRR2868004	Drought Stress (root)	20.041
SRR2967015	Control (root)	22.392

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	15.933
SRR9715740	Leaf	16.338
SRR9715741	Leaf	12.860
SRR9715739	Root	3.728
SRR9715742	Root	15.897
SRR9715743	Root	13.398

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	20.489
SRR8749028	MeJA induced 9h	19.936
SRR8749029	MeJA induced 9h	9.163
SRR8749030	Uninduced	7.167
SRR8749031	Uninduced	3.312
SRR8749032	Uninduced	3.046

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	29.385
SRR8400027	Control - Root	30.800