Gene detail information of Glyur001330s00038583.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G01650.2 | 1.00E-33 | Tautomerase/MIF superfamily protein |
| NR | XP_003522191.1 | 1.71E-66 | PREDICTED: macrophage migration inhibitory factor homolog [Glycine max] |
| COG | YP_001017772.1 | 3.00E-09 | ATLS1-like light-inducible protein [Prochlorococcus marinus str. MIT 9303] |
| trEMBL | tr|I1JL56|I1JL56_SOYBN | 6.00E-67 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA03G05600.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold01330 | 20964 | 26487 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| K07253 | MIF | EC:5.3.2.1 | Tyrosine metabolism | map00350 |
| Phenylalanine metabolism | map00360 |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur001330s00038583.1 | PF01187.13 | MIF | 2 | 103 | 2.90E-11 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 11.630 |
| SRR1783600 | control | 12.237 |
| SRR1783602 | moderate drought stress | 7.414 |
| SRR1811619 | moderate drought stress | 6.345 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 1.884 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 1.367 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.711 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 1.156 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 2.004 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 2.790 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.969 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.604 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 22.979 |
| SRR2868004 | Drought Stress (root) | 25.881 |
| SRR2967015 | Control (root) | 18.260 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 1.713 |
| SRR9715740 | Leaf | 1.854 |
| SRR9715741 | Leaf | 3.433 |
| SRR9715739 | Root | 1.159 |
| SRR9715742 | Root | 6.777 |
| SRR9715743 | Root | 5.020 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 7.517 |
| SRR8749028 | MeJA induced 9h | 6.870 |
| SRR8749029 | MeJA induced 9h | 14.048 |
| SRR8749030 | Uninduced | 13.282 |
| SRR8749031 | Uninduced | 5.718 |
| SRR8749032 | Uninduced | 5.243 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 14.915 |
| SRR8400027 | Control - Root | 11.221 |