Gene detail information of Glyur001327s00032654 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G17700.1 | 3.00E-106 | cyclic nucleotide-binding transporter 1 |
| NR | XP_007152603.1 | 1.68E-150 | hypothetical protein PHAVU_004G144000g [Phaseolus vulgaris] |
| Swissprot | tr|Q9LD37|CNG20_ARATH | 8.00E-120 | Probable cyclic nucleotide-gated ion channel 20, chloroplastic (Precursor) |
| trEMBL | tr|V7C5F6|V7C5F6_PHAVU | 6.00E-151 | Uncharacterized protein {ECO:0000313|EMBL:ESW24598.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold01327 | 35935 | 48339 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| -- | -- | -- | -- | -- | -- |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 3.055 |
| SRR1783600 | control | 3.124 |
| SRR1783602 | moderate drought stress | 1.560 |
| SRR1811619 | moderate drought stress | 1.477 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 4.411 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 4.084 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.341 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.382 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.866 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.989 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.058 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.021 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 0.349 |
| SRR2868004 | Drought Stress (root) | 0.010 |
| SRR2967015 | Control (root) | 0.110 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 0.211 |
| SRR9715740 | Leaf | 0.109 |
| SRR9715741 | Leaf | 0.090 |
| SRR9715739 | Root | 2.810 |
| SRR9715742 | Root | 2.546 |
| SRR9715743 | Root | 2.892 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 9.225 |
| SRR8749028 | MeJA induced 9h | 0.968 |
| SRR8749029 | MeJA induced 9h | 6.432 |
| SRR8749030 | Uninduced | 0.443 |
| SRR8749031 | Uninduced | 1.399 |
| SRR8749032 | Uninduced | 1.347 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 13.133 |
| SRR8400027 | Control - Root | 13.469 |