Gene detail information of Glyur001327s00032647 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G17700.1 | 4.00E-71 | cyclic nucleotide-binding transporter 1 |
| NR | XP_004515246.1 | 1.37E-125 | PREDICTED: probable cyclic nucleotide-gated ion channel 20, chloroplastic-like isoform X1 [Cicer arietinum] |
| Swissprot | tr|Q9LD37|CNG20_ARATH | 1.00E-81 | Probable cyclic nucleotide-gated ion channel 20, chloroplastic (Precursor) |
| trEMBL | tr|G7K6G2|G7K6G2_MEDTR | 1.00E-122 | Cyclic nucleotide-gated cation channel protein {ECO:0000313|EMBL:AES93800.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold01327 | 8579 | 19316 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| -- | -- | -- | -- | -- | -- |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.077 |
| SRR1783600 | control | 0.074 |
| SRR1783602 | moderate drought stress | 0.350 |
| SRR1811619 | moderate drought stress | 0.405 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.673 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.643 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 4.584 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 4.119 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 2.616 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 2.038 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 0.260 |
| SRR2868004 | Drought Stress (root) | 0.253 |
| SRR2967015 | Control (root) | 0.205 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 17.179 |
| SRR9715740 | Leaf | 25.038 |
| SRR9715741 | Leaf | 21.001 |
| SRR9715739 | Root | 0.515 |
| SRR9715742 | Root | 2.876 |
| SRR9715743 | Root | 2.045 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 2.113 |
| SRR8749028 | MeJA induced 9h | 5.171 |
| SRR8749029 | MeJA induced 9h | 1.952 |
| SRR8749030 | Uninduced | 6.642 |
| SRR8749031 | Uninduced | 4.358 |
| SRR8749032 | Uninduced | 4.837 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 5.923 |
| SRR8400027 | Control - Root | 3.229 |