Gene detail information of Glyur001326s00026357 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT2G05642.1 | 2.00E-06 | Nucleic acid-binding, OB-fold-like protein |
| NR | XP_003628568.1 | 2.06E-36 | Replication factor A protein [Medicago truncatula] |
| trEMBL | tr|G7LDT6|G7LDT6_MEDTR | 1.00E-26 | Replication factor-A carboxy-terminal domain protein {ECO:0000313|EMBL:AET03044.2} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold01326 | 37541 | 40002 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur001326s00026357.1 | PF02721.9 | DUF223 | 52 | 117 | 1.30E-05 |
| Glyur001326s00026357.1 | PF08646.5 | Rep_fac-A_C | 210 | 276 | 9.10E-11 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.000 |
| SRR1783600 | control | 0.000 |
| SRR1783602 | moderate drought stress | 0.590 |
| SRR1811619 | moderate drought stress | 0.531 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.000 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.000 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.240 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.000 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 6.773 |
| SRR2868004 | Drought Stress (root) | 4.548 |
| SRR2967015 | Control (root) | 3.882 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 0.000 |
| SRR9715740 | Leaf | 0.000 |
| SRR9715741 | Leaf | 0.000 |
| SRR9715739 | Root | 0.000 |
| SRR9715742 | Root | 0.067 |
| SRR9715743 | Root | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 2.367 |
| SRR8749028 | MeJA induced 9h | 6.736 |
| SRR8749029 | MeJA induced 9h | 4.786 |
| SRR8749030 | Uninduced | 19.509 |
| SRR8749031 | Uninduced | 18.655 |
| SRR8749032 | Uninduced | 10.332 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 0.554 |
| SRR8400027 | Control - Root | 0.600 |