Gene detail

Gene detail information of Glyur001326s00026353.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT2G39800.4	0	delta1-pyrroline-5-carboxylate synthase 1
NR	XP_003529108.2	0	PREDICTED: delta-1-pyrroline-5-carboxylate synthase-like isoform X1 [Glycine max]
COG	YP_007082681.1	4.00E-119	gamma-glutamyl phosphate reductase [Pleurocapsa sp. PCC 7327]
Swissprot	tr\|O04226\|P5CS_ORYSJ	0	Gamma-glutamyl phosphate reductase
trEMBL	tr\|K7L1J4\|K7L1J4_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA07G16510.3}

Sequence

Transcript Sequence

>Glyur001326s00026353.1
GCTCTTTCTTTTCCCATTCTTCTTCCGAAAGAATTTAACCAATCAGTGTCGTTGTGGTGTCGTCGACTCGCTCACTCGCTCCTCCAACTCGGTGCTCTTCCTTTGGACGGGCTCCATGGATCCTACACGAGCTTTTGTTAAAAGTGTCAGGCGTATTGTTGTCAAGGTTGGAACAGCTGTGGTTACTCGAAGTGATGGAAGATTAGCATTGGGAAGACTTGGAGCTCTTTGCGAGCAGCTTAAAGAGCTAAATACTAAGGGATATGAGGTTATATTGGTTACTTCAGGCGCAGTTGGTCTTGGCCGGCAAAGACTAAGATATCGCAGATTGGCCAATAGCAGCTTTTCTGATCTTCAAAAGCCACAAGATGAACTTGATGGCAAAGCATGTGCTGCTGTTGGGCAGAGTAGTCTCATGGCTCTCTATGATATCATGTTTAGTCAGCTTGATGTGACTTCATCCCAACTTCTTGTGAATGATGGGTTTTTTAGGGATACAGCTTTCAGAAAACAACTATCGGACACTGTGAACTCGTTATTAGATTTAAGGGTTATCCCCATTTTCAATGAAAATGATGCTGTTAGTACTAGGAAAGCACCGTATGAGGATTCTTCTGGTATCTTCTGGGATAATGATAGTTTGGCTGGTCTATTGGCTTTGGAACTTAAAGCTGACCTTCTTGTTTTGCTGAGTGATGTTGAGGGCCTTTATAGTGGCCCTCCAACTGATCCAAAGTCAAAGTTGATTCACACATATGTAAAAGAAAAACATCAAAGAGAAATTACTTTTGGAGACAAGTCAAGATTGGGCAGAGGGGGTATGACTGCTAAAGTTAATGCTGCTGTTTGTGCTGCTTATGCTGGCACACCTGTGATTATTACCAGTGGCTATGCTCAAGACAACATCATACGAGTGCTTCAAGGAGAAAGAATTGGTACTGTCTTTCACAAGGATGCTCAGTTGTGGACCAGCATTAAGGAAGTGAGTGCACATGAAATGGCAGTTGCAGCACGGGACAGTTCTAGAAAACTTCAGGTTCTAAATTCTGAAGAAAGGAGGAAAATATTGCTGGCTATGGCTGATGCATTAGAGAAAAATGATAGTATGATAAGGCTTGAGAATGGGGCTGATGTTGCTGATGCAGAGGAGGCTGGATATGAGAAATCACTGATATCACGTCTAACCNTGAGACCTGAGAAGATGTCTAGTCTTGTAAAGTCTGTTCGCACGCTGGCAGACATGGAAGAACCCATTGGTCAGATTTTAAANAGAACTGAGCTAGCAGATAAACTCACACTGGACAAAATATCATGTCCTTTGGGTGTAGTTCTAGTTATATTTGAGTCTCGACCCGATGCTCTTGTTCAGATTGCTGCATTGGCAGTTCGAAGTGGAAATGGTTTACTGCTTAAAGGAGGAAAGGAAGCCAAACGATCAAATGCAGTTTTACACAAGGTCATTACTTCNGTTATGCCAGATACAGTTGGTGACAAACTTATTGGTCTTGTGACTTCAAGAGAAGACATTCCAGATCTGCTCAAGCTTGATGACGTGATAGATCTTGTGGTCCCCAGAGGCAGTAATAAGCTTGTTTCTCAAATCAAGGATTCAACAAAGATTCCTGTTCTTGGTCATGCTGATGGAATATGTCATGTATATGTTGACAAAGCAGCTAATATTGATATGGCAAAGCAGATTGTTAGGGATGCAAAGATGGACTATCCTGCAGCCTGCAATGCAATGGAAACCCTTCTTGTACACAAAGATCTGTCAGGAAATGGTATACTTGATGAACTTGTTGCTGAACTCCAACGTGAAGGTGTTCAACTTTATGGTGGACCAAGAGCCAGTGCCTTATTAAATATTGCTGAAACACACTCTTTCCATCAGGAGTATAGCTCACTGGCTTGTACAGTTGAAATTGTAGATGATGTATTTGCTGCAATTGACCACATACATCAACATGGAAGGCAAGTTTGGGGTCAATATATATTTCTTTTGCTGTTTTGCAGTTCTCATACTGAATGCATTGTTACAGAAGACTCTGAAGTTGCTGAAACTTTCTTACAACAAGTTGACAGTGCTGCTGTATTCCACAATGCAAGTACAAGGTTTTGTGATGGAGCACGCTTTGGGCTTGGTGCAGAGGTTGGAATAAGCACAAGCAGAATTCATGCTCGAGGTCCTGTAGGAGTTGAGGGGTTGTTAACAAATAGATGGTAA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold01326	9619	18930	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K12657	ALDH18A1, P5CS	EC:2.7.2.11 1.2.1.41	Biosynthesis of amino acids	map01230
			Biosynthesis of amino acids	map01230
			Biosynthesis of amino acids	map01230
			Arginine and proline metabolism	map00330
			Arginine and proline metabolism	map00330
			Arginine and proline metabolism	map00330

Gene Ontology

biological_process

GO:0006561 proline biosynthetic process

GO:0008152 metabolic process

GO:0055114 oxidation-reduction process

cellular_component
GO:0005737 cytoplasm

molecular_function

GO:0003824 catalytic activity

GO:0004349 glutamate 5-kinase activity

GO:0004350 glutamate-5-semialdehyde dehydrogenase activity

GO:0016491 oxidoreductase activity

GO:0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001326s00026353.1	PF00696.23	AA_kinase	13	257	5.10E-32
Glyur001326s00026353.1	PF00171.17	Aldedh	291	565	2.10E-07

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	17.280
SRR1783600	control	17.516
SRR1783602	moderate drought stress	6.660
SRR1811619	moderate drought stress	6.716

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	38.445
DRR006520	Root Summer glycyrrhizin high producing strain	37.587
DRR006521	Root Winter glycyrrhizin high producing strain	13.172
DRR006522	Root Winter glycyrrhizin high producing strain	13.315
DRR006523	Root Summer glycyrrhizin low producing strain	9.328
DRR006524	Root Summer glycyrrhizin low producing strain	9.068
DRR006525	Leaf Summer glycyrrhizin high producing strain	2.190
DRR006526	Leaf Summer glycyrrhizin high producing strain	2.266

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	39.037
SRR2868004	Drought Stress (root)	21.432
SRR2967015	Control (root)	16.670

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	2.208
SRR9715740	Leaf	2.522
SRR9715741	Leaf	2.233
SRR9715739	Root	3.046
SRR9715742	Root	11.363
SRR9715743	Root	9.396

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	13.025
SRR8749028	MeJA induced 9h	18.768
SRR8749029	MeJA induced 9h	8.764
SRR8749030	Uninduced	8.202
SRR8749031	Uninduced	5.455
SRR8749032	Uninduced	5.037

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	22.505
SRR8400027	Control - Root	9.276