Gene detail

Gene detail information of Glyur001325s00032738.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G31500.1	2.00E-96	cytochrome P450, family 83, subfamily B, polypeptide 1
NR	XP_004491826.1	0	PREDICTED: cytochrome P450 71A1-like [Cicer arietinum]
COG	YP_004303682.1	2.00E-29	cytochrome P450 [Polymorphum gilvum SL003B-26A1]
Swissprot	tr\|O65782\|C83B1_ARATH	3.00E-122	Cytochrome P450 83B1
trEMBL	tr\|Q2MJ13\|Q2MJ13_MEDTR	0	Cytochrome P450 monooxygenase CYP83E9 {ECO:0000313\|EMBL:ABC59083.1}

Sequence

Transcript Sequence

>Glyur001325s00032738.1
TTCCCCTCACTTGGCCCNCTAAAACTCTCTTACAATGGTTTAGACCTTATTTTCTCCCCATACAATGATTGCTGGAGAGAGATCAGGAAAATCTGTGTGGTCCATTTCTTCAGCTCCAAGAAAATCTCTAGCTTTTCACATATAAGAATATCTGAGGTGAAAGAAATGANCAAAAAGATATCTGGGCATGTTTGTTCTTCTAAAGTTACAAACTTGAGTGAGATAATCATGTCTGTGTCAAGCTCTATAGTGTGTAGGATTGCCTTTGGGAAGAAATATGAGGATGAAGGAGCTGAGAAGAGTAGGTTCCATGGTTTGCTTAATGAGATACAGGCTATTTTTCTTTCCTTCTTTGTTTCTGACTATATTCCTTTCATGGGGTGGGTTGATAAACTCACTGGGTTGCTTGATCGTGTTGACAACTCTTTCAAGGCATTGGATGTGTTTTTTGAAGAAGTGCTTAATGAGCACCTCGATCCTAATAGGCAGAAGAAAGAAAGGCAAGAGGATGAGGAGGAGGATATTGTTGATGTGTTGCTTGAGTTGAAGAAGCAGGGTCGCCTTTCAATTGATCTCACCANTGATCACATCAAAGCTGTCATCATGAACCTACTTGTAGCAGCCACTGACACAAGTGCAGCCACATCAGTTTGGGCGATGACTGGANTAATGAAGAACCCAAGAGCAATGAAGAAAGCTCAAGAAGAAATCAGAACTATANGTGGCAACAAAGAGTTCATTGATGAGGATGACATCCAAAGGCTTGTATATCTCAAGGCAGTAATAAAAGAGACACTAAGGTTTTATGCACCAGCACCACTAGTACCAAGAGAGACCAATAAGAGCATCACTATAGATGGTTATGAAATTCAGCCCAAGACATTGGTGTATGTGAANGGACAAGATTTTGAGCTGATTCCATTTGGNGCTGGGCGTAGAATCTGCCCAGGGATACCACTTGGAGTTGCCACTGTGGAGCTCATAACTGCAAACCTTCTCAATTCATTTGATTGGGAAATGCCTGAAGGGATGACAAGGGAAGATATTGACACTGAAGGGCTTCCAGGACTTGCTAGTCATAAGAAGAATCATCTTTGTCTTGTTGCCAAGAATCACGTATTCCCCACACTTGGTCCACTGAAACTCTCTTACAATGGGTTAGACCTTATCTTTTCCCCATACAATGATTGCTGGAGAGAGATCAGGAAAATCTGTGTAATCCATTTCTTCAGCTCCAAGAAAATCTCTAGCTTTTCACATGTAAGAATATCTGAGGTCAAGGAAATGATCAAGAAGATATCTGGGCATGCTTGTTCTTCTAAAGTTACAAACTTGAGTGAGATCACCATGTCTGTGTCAAGCTCTATAGTGTGTAGAATTGCCTTTGGGAAGAAATATGAGGATGAAGGAGTTGAGAAAAGCAGGTTTCATGGTTTGTTTAATGAGATACAGGCTATTTTTCTTTCATTCTTTGTTTCTGACTATATTCCTTTCATGGGGTGGGTTGATAGACTCACTGGGTTGCTTGCTCGTGTTGACAACACTTTTAAGGCATTGGATGTGTTTTTTGAAGAAGTGCTTAATGAGCACCTCGATCCTAATAGGCAGAAGAAAGAAAGCCAAGAGGAGGAGGAGGAGGATATTGTTGATGTGTTGATTGAGTTGAAGAAGCAGGGTTGCCTCTCAATAGATCTCACCAATGATCACATCAAAGCTGTCATCATGAACCTACTTGGAGCAGCCACTGACACAAGTGCAGCCACATCAGTGTGGGTGATGACCGGACTAATGAAGAACCCAAGAGCAATGAAGAAAGCTCAAGAAGAAGTCAGAACTCTATGTGGCAAGAAAGAGTTCATTGATGAGGATGACATTCAAAAGCTTGTATATCTCAAGGCAGTGATAAAAGAGACACTAAGGTTCTATGCACCAGCACCACTAGTTCCAAGAGAAACCAACAAAAGCATCACTATAGATGGTTATGAAATTCAGCCCAAGACATTGGTGTATGTGAATGTGTGGGCCATTCATAGGGACCCTGAGACTTGGAAAGACCCAGAAGAGTTTTGTCCTGAGAGATTCTTGAACAGTGGTGTTGATTTTAAGGGACAGCATTTTGAGCTGATTCCATTTGGCGCTGGCCGTAGAATATGCCCGGGGATACCAATGGGAATTGCTACGGTGGAGCTCATAACCGCAAACCTTCTCAATTCATTTGATTGGGAAATGCCTGAAGGGATGGCAAGGGAAGATATTGACACTGAAGGGCTTCCAGGACTTGCCATACATAAGAAGAATCATCTTTGTCTTGTTGCCAAGAATCACGTGTGAATGTGAATGTTAACTCACAACACACATGAGCTT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold01325	27602	42083	+

Gene family

Gene family	subfamily
Cytochrome P450 Family	CYP83B1

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0055114 oxidation-reduction process

molecular_function

GO:0005506 iron ion binding

GO:0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen

GO:0020037 heme binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001325s00032738.1	PF00067.17	p450	11	298	6.70E-50
Glyur001325s00032738.1	PF00067.17	p450	300	364	1.00E-10
Glyur001325s00032738.1	PF00067.17	p450	381	767	5.90E-86

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.264
SRR1783600	control	0.277
SRR1783602	moderate drought stress	0.743
SRR1811619	moderate drought stress	0.774

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	12.096
DRR006520	Root Summer glycyrrhizin high producing strain	11.889
DRR006521	Root Winter glycyrrhizin high producing strain	14.427
DRR006522	Root Winter glycyrrhizin high producing strain	13.827
DRR006523	Root Summer glycyrrhizin low producing strain	24.490
DRR006524	Root Summer glycyrrhizin low producing strain	23.949
DRR006525	Leaf Summer glycyrrhizin high producing strain	35.025
DRR006526	Leaf Summer glycyrrhizin high producing strain	34.825

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	8.235
SRR2868004	Drought Stress (root)	7.815
SRR2967015	Control (root)	11.582

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	0.083
SRR9715740	Leaf	0.043
SRR9715741	Leaf	0.057
SRR9715739	Root	0.215
SRR9715742	Root	1.011
SRR9715743	Root	0.951

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	14.299
SRR8749028	MeJA induced 9h	61.439
SRR8749029	MeJA induced 9h	17.837
SRR8749030	Uninduced	245.171
SRR8749031	Uninduced	296.340
SRR8749032	Uninduced	100.928

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	2.289
SRR8400027	Control - Root	2.362