Gene detail information of Glyur001324s00031592 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G25690.2 | 2.00E-137 | Hydroxyproline-rich glycoprotein family protein |
| NR | XP_006606276.1 | 0 | PREDICTED: protein CHUP1, chloroplastic-like [Glycine max] |
| Swissprot | tr|Q9LI74|CHUP1_ARATH | 0 | Protein CHUP1, chloroplastic |
| trEMBL | tr|K7N4B5|K7N4B5_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA20G32630.2} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold01324 | 12399 | 17291 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| -- | -- | -- | -- | -- | -- |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 4.421 |
| SRR1783600 | control | 4.442 |
| SRR1783602 | moderate drought stress | 4.893 |
| SRR1811619 | moderate drought stress | 4.920 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 8.354 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 8.217 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 4.574 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 4.297 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 6.871 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 6.701 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 3.301 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 3.204 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 10.448 |
| SRR2868004 | Drought Stress (root) | 10.197 |
| SRR2967015 | Control (root) | 9.332 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 3.145 |
| SRR9715740 | Leaf | 3.583 |
| SRR9715741 | Leaf | 3.397 |
| SRR9715739 | Root | 0.822 |
| SRR9715742 | Root | 5.377 |
| SRR9715743 | Root | 4.449 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 2.499 |
| SRR8749028 | MeJA induced 9h | 2.335 |
| SRR8749029 | MeJA induced 9h | 1.102 |
| SRR8749030 | Uninduced | 1.175 |
| SRR8749031 | Uninduced | 0.682 |
| SRR8749032 | Uninduced | 0.668 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 11.019 |
| SRR8400027 | Control - Root | 9.808 |