Gene detail

Gene detail information of Glyur001324s00031590

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G31270.1	6.00E-23	sequence-specific DNA binding transcription factors
NR	XP_003588619.1	2.85E-65	hypothetical protein MTR_1g009220 [Medicago truncatula]
trEMBL	tr\|G7I568\|G7I568_MEDTR	3.00E-64	Myb/SANT-like DNA-binding domain protein {ECO:0000313\|EMBL:AES58869.1}

Sequence

Transcript Sequence

>Glyur001324s00031590.1
ATTTTTATTTTTTATTTTTTATTTTAAAGTAGTTGTACGAGAACGAAGGGTTTCAGCAATAACTGAAACACTATAAATATCAAGGGTTTTGTTCCTTTTGGGTATGCATAATGCGTACGATGTGTGGTCTCTCTATGATCCGTCGGCGATGATGAAGGAAAACGGTGGTCGAACTCGATGGACGCGATCACAAGCGGAACCGGAGTGGAGCGAAGCGGAATCGCTGATTCTGTTGAACGAGATTGCGGAGGTGGAAGCTGACATTCCCAGACAGCTATGGTCGTTCGATCGGTGGCGCATCATTGCCGAAAACTGCGCCGCCCTGGACGTCGGTCGGAACTTCTCTAAGTGCCGGAGAAAGTGGCGCGCGCTCCTCTCCGACTACAACCACGTCGTCAGAAGAAGCAGTTTGAGTCCCGAGTTGTTTGGGGCGATCGAGCGAGTCGTGAAAGGGCGTCAAGAACGAGGCCAGCTTGACCTCGATTTCGATGCCGTACCGGCAAATGAGGCCACCGTCAAAATTGGGTCCAGAAGAAAAAGGCAGCTTCATTTAGAAGAATTCTTGGTGGAAGACTACCTGGCAAAGACATACAAGTTGAAATGTGCTTTAAAAAGGCGTCGAAAGCAGATAGAGATGCAGATAGAGATGCAGAAGAGCCTTGCCAAAGTAGAGCTAGATGAAAACCACGGTATTGAAAAGCCAAAGCTGACCAAGGTAGGAGACATAACAAATAGCAGGGAAGAAAATGAGGAAATGTTGATGCTGAAATTGCAAGAGTTGGCAATAGAGATTCAAGCGATTAATGCTGAATTAGCGGACACAACTATGTCGCAGAATATAGAGGACTATACTGAATTTACAAGACGCCAAGGGTATAAGATCAAACAAAGGCCTGAGGATCAAAGAGGATGTATTGATGAAAGGCCTGCGGAAAGCCATCAAGAAAAGTATCTGAAGTCTACCCAAGAAAAAAAAGAAGAAAAGTATCTGAAAGACTTCCTAGAAAAGAGATACAAGTTGAAATTTGCTGAAAAAAGGTGTCGAAAGCACATAGAGATGCCACTGAGGAGCCTTGCCAAAGTAGAGCTTGATGAAAACCACGATATTGAAAAGCCAAAGCTGACCAGTGTTGGAAACATAACAAATAGCAGGGAAGAAAATGAGGAAATGTTGACCCGGAAATTGCAAGAGTTAGAGATTCAAGTCCGTGGTTGCCTTGAGCATGGGCGGGAGGAGCGACCCCATTTTTAGATGGAAACCAGAATGTGAAATTCTACTTACTATAGAATAATTTCTGGAGAACAATAATCAAATGATTTTGAGGGTATCATTATTTAAGTTTGCACAAGGATTCCAAAATATTAGGGTTTGCCTGAATTCTAGCGATTAGTGTTGAGTCAGCAGATAGTAGTAAAACC

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold01324	2548	5284	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

Not hits found.

Not hits found.

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001324s00031590.1	PF13837.1	Myb_DNA-bind_4	33	102	8.00E-07

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	13.277
SRR1783600	control	13.288
SRR1783602	moderate drought stress	2.764
SRR1811619	moderate drought stress	2.813

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	34.795
DRR006520	Root Summer glycyrrhizin high producing strain	34.312
DRR006521	Root Winter glycyrrhizin high producing strain	28.226
DRR006522	Root Winter glycyrrhizin high producing strain	27.775
DRR006523	Root Summer glycyrrhizin low producing strain	49.050
DRR006524	Root Summer glycyrrhizin low producing strain	48.870
DRR006525	Leaf Summer glycyrrhizin high producing strain	13.803
DRR006526	Leaf Summer glycyrrhizin high producing strain	13.633

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	11.373
SRR2868004	Drought Stress (root)	13.555
SRR2967015	Control (root)	10.318

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	0.000
SRR9715740	Leaf	0.000
SRR9715741	Leaf	0.000
SRR9715739	Root	0.000
SRR9715742	Root	0.063
SRR9715743	Root	0.000

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	32.667
SRR8749028	MeJA induced 9h	24.734
SRR8749029	MeJA induced 9h	34.607
SRR8749030	Uninduced	20.957
SRR8749031	Uninduced	27.409
SRR8749032	Uninduced	22.319

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	1.622
SRR8400027	Control - Root	0.000