Gene detail

Gene detail information of Glyur001323s00031181

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G18390.2	2.00E-99	Protein kinase superfamily protein
NR	XP_004512900.1	2.50E-155	PREDICTED: probable serine/threonine-protein kinase At1g18390-like isoform X2 [Cicer arietinum]
COG	YP_643722.1	2.00E-25	serine/threonine protein kinase [Rubrobacter xylanophilus DSM 9941]
Swissprot	tr\|P0C5E2\|Y1839_ARATH	8.00E-118	Probable serine/threonine-protein kinase At1g18390 (Precursor)
trEMBL	tr\|A0A072UB44\|A0A072UB44_MEDTR	7.00E-149	Wall-associated kinase-like protein {ECO:0000313\|EMBL:KEH27004.1}

Sequence

Transcript Sequence

>Glyur001323s00031181.1
ATGGCAGAACAATGGCAATACCATGCTTTTTTGACCCGTTTTGGTTTTGTTGCCGGTGTTGCTTCTAGTGTGTTAGGAGCACTTCTTGCAGTGAATATTGGCTTGTATTTATATAAGCGCCAAAGGAATAAGCGCCAAAAGACCATTGACTTGAATTTATGTAAGCCCCGAACGAATGGTTATGCAATGTCATATATACAATCTGGGAGCCTCACTTCTTCTGATCCATCTTCCAAAGACCCNGAGAAGGAAAGTCTACGCTTGGGACAAAGTCAAAACTTTGGAGTGCATGTCTTCACCTATATGAAGAGGTTGTATGAGAAAAATTACAAAAGAGTTGAGCAATTCATGAATGAAGTTCAGATCCTAGCTCGGTTAGTACATCCAAATCTTGTGTCACTATATGGATGCACCTCTCTTCACAGCAGTAATCTTCTCCTTGTCTATGAGTACGTCCCCAATGGAACAGTTGCTGATCATCTTCATGGTAGACATGCAAAACCCGGAAAACTCCCTTGGAGTGTTAGAATGAACATTGCAGTGGAGATAGCAGATGCATTGAAGTATCTTCATGTATCTGACATCATCCACAGAGACATAAAAACCAATAACATCCTTCTTGACAATCACTTCCGCGTCAAGGTAGCAGATTTTGGACTCTCACGTCTATTCCCAAACAATCTCACCCATGTGACAACAGCTCCACAAGGGACCCTGGGTTATATGGATCCGGAGTATCATCAGTGCTATAAGTTAACTTACAAAAGTGACGTCTATAGCTTTGGGGTCGTGCTGGTTGAGTTGATATCATCCTTGCCTGCTGTTGACCTCACAAGGCATAATACACATGAAATCAATTTGGCCAACATGGCAATTAGCAAGATCCAAAACCAAGCACTGCATGAACTTGTGGACCCTACCCTTGGGTTTGAATCAGATCACGAGGTACGGGAAATGATAAATGCTGTAGCTGAGTTAGCATTTCAGTGCCTGCAGGATTCCAGGGAGCTCCGGCCATCCATGAAACAATATTCTATCATTCTATAA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold01323	15332	17753	+

Gene family

Gene family	subfamily
Protein Kinases Family	PPC:1.5.2

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006468 protein phosphorylation

molecular_function

GO:0004672 protein kinase activity

GO:0005524 ATP binding

GO:0016772 transferase activity, transferring phosphorus-containing groups

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001323s00031181.1	PF00069.20	Pkinase	97	343	8.70E-44

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.031
SRR1783600	control	0.051
SRR1783602	moderate drought stress	0.036
SRR1811619	moderate drought stress	0.000

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.000
DRR006520	Root Summer glycyrrhizin high producing strain	0.000
DRR006521	Root Winter glycyrrhizin high producing strain	0.053
DRR006522	Root Winter glycyrrhizin high producing strain	0.045
DRR006523	Root Summer glycyrrhizin low producing strain	0.000
DRR006524	Root Summer glycyrrhizin low producing strain	0.000
DRR006525	Leaf Summer glycyrrhizin high producing strain	2.491
DRR006526	Leaf Summer glycyrrhizin high producing strain	2.409

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	0.039
SRR2868004	Drought Stress (root)	0.031
SRR2967015	Control (root)	0.000

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	53.289
SRR9715740	Leaf	63.119
SRR9715741	Leaf	74.774
SRR9715739	Root	1.073
SRR9715742	Root	2.373
SRR9715743	Root	2.187

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	5.911
SRR8749028	MeJA induced 9h	5.825
SRR8749029	MeJA induced 9h	9.090
SRR8749030	Uninduced	5.203
SRR8749031	Uninduced	3.071
SRR8749032	Uninduced	2.571

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	0.048
SRR8400027	Control - Root	0.405