Gene detail

Gene detail information of Glyur001323s00031177.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G18390.1	6.00E-72	Protein kinase superfamily protein
NR	KEH26978.1	0	tyrosine kinase family protein [Medicago truncatula]
COG	YP_284821.1	2.00E-18	protein kinase:GAF [Dechloromonas aromatica RCB]
Swissprot	tr\|P0C5E2\|Y1839_ARATH	3.00E-82	Probable serine/threonine-protein kinase At1g18390 (Precursor)
trEMBL	tr\|A0A072UD27\|A0A072UD27_MEDTR	0	Tyrosine kinase family protein {ECO:0000313\|EMBL:KEH26978.1}

Sequence

Transcript Sequence

>Glyur001323s00031177.1
ATGCCAATTATCTCTTTTTTATCTCGCTGTTTCTACCCTGATGGGAGTAGAAACCACACTTCACTACCAAATGGTTCTTCTAAGGTGAAGGGTAGTGATGATCAATTGGTGTCTGTGGATTCTAAGGTTCCAAGCAGGTGGAGTGAATCGGTGCCTGTGATCTCTGAGCTGCCACCAAGTAATCATCATGGTCAATCAATGTTGGTTGATTCTGAGGTTCTGAACAACAACAGCCACCAATGCCACAACACAAGTGAGATCTTCAAGTATTCTGAACTTGAAGAAGCCACCAACAATTTTGACCCTAGTAGAATGCTTGGGAGTGGAGGCTATGGGACAAAGCTTGAGGCGGAGAGACTTGGAAAGTTCATGAATGAAGTTGCAATGTTAACTGGCATGAGGCATGAAAACCTTGTCCAACTGTATGGCTGCACCTCTCCCCAGACCCGTGAGCTGCTTCTCGTGCAAGAATACATTCCAAACGGAACTCTGGCTCATCGTCTCCGTCTTCATCTTCATCGTAAAGACACCTTCCCATGGTCTACTCGACTAAATGTTGCCATACAAACCGCGAGTGCATTGGCTTATCTCCATGCTTCCAATATCATCCACCGCGATGTGAAAACCAGTAACATCCTGCTTGACACAAGCTTGAATGCTAAATCGTGCCTTGTCCCGCATGGAGTTACCCATGTTACAACTGATCCTGCTGGGACCCCGAGTTATATTGACCCGGAGTATTATGAAAACTGCCATCTTTCTGATAAGAGTGATGTGTACAGCTTTGGGGTGATATTGGTTGAGCTGATATCATCTTTGCCTGCATTCAATGAGGACGATAAACAGCCCTTTCTTTCAGATTTTGCAATGGATAAAATCTTTTGTGGACAGTTCCAAAAGATTGTTGACCCAGATCTTGGATTTGAATCAGACAAGTGGATAAGTGAAACAATAAATGCAGTGGCAGAGGTGGCAGCATTTAGCTGCCTACAACCACACAAAGACATGAGACCTTCCATGGGTGAGGCTTTGAGTACTCTTGAGAGCATTAGAAGTGGAAGTTCTCATAATGCTCTTAACCGGGGTCCAAATAGATGCTATAATGCAACCAAAGTGCACATTGTGTCCCGCTTGCCTGATGATTATTTTGAGAAGAAATAG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold01323	492	2508	-

Gene family

Gene family	subfamily
Protein Kinases Family	PPC:1.5.2

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006468 protein phosphorylation

molecular_function

GO:0004672 protein kinase activity

GO:0005524 ATP binding

GO:0016772 transferase activity, transferring phosphorus-containing groups

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001323s00031177.1	PF00069.20	Pkinase	124	345	2.70E-32

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	1.679
SRR1783600	control	1.557
SRR1783602	moderate drought stress	0.912
SRR1811619	moderate drought stress	0.812

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	15.387
DRR006520	Root Summer glycyrrhizin high producing strain	14.897
DRR006521	Root Winter glycyrrhizin high producing strain	3.347
DRR006522	Root Winter glycyrrhizin high producing strain	3.302
DRR006523	Root Summer glycyrrhizin low producing strain	4.611
DRR006524	Root Summer glycyrrhizin low producing strain	4.563
DRR006525	Leaf Summer glycyrrhizin high producing strain	4.210
DRR006526	Leaf Summer glycyrrhizin high producing strain	4.470

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	1.736
SRR2868004	Drought Stress (root)	2.089
SRR2967015	Control (root)	1.331

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	0.000
SRR9715740	Leaf	0.006
SRR9715741	Leaf	0.013
SRR9715739	Root	0.104
SRR9715742	Root	0.044
SRR9715743	Root	0.052

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.244
SRR8749028	MeJA induced 9h	0.258
SRR8749029	MeJA induced 9h	0.105
SRR8749030	Uninduced	0.355
SRR8749031	Uninduced	0.214
SRR8749032	Uninduced	0.573

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	4.526
SRR8400027	Control - Root	8.407