Gene detail information of Glyur001322s00037578 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT4G37925.1 | 3.00E-47 | subunit NDH-M of NAD(P)H:plastoquinone dehydrogenase complex |
| NR | XP_007137481.1 | 8.15E-84 | hypothetical protein PHAVU_009G130400g [Phaseolus vulgaris] |
| Swissprot | tr|A7NVJ4|NDHM_VITVI | 3.00E-77 | NAD(P)H-quinone oxidoreductase subunit M, chloroplastic (Precursor) |
| trEMBL | tr|V7AVZ4|V7AVZ4_PHAVU | 3.00E-84 | Uncharacterized protein {ECO:0000313|EMBL:ESW09475.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold01322 | 24951 | 26814 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur001322s00037578.1 | PF10664.4 | NdhM | 81 | 200 | 1.50E-26 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.000 |
| SRR1783600 | control | 0.000 |
| SRR1783602 | moderate drought stress | 0.030 |
| SRR1811619 | moderate drought stress | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.000 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.000 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 158.501 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 153.926 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 0.228 |
| SRR2868004 | Drought Stress (root) | 0.696 |
| SRR2967015 | Control (root) | 0.263 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 71.826 |
| SRR9715740 | Leaf | 99.938 |
| SRR9715741 | Leaf | 75.347 |
| SRR9715739 | Root | 0.000 |
| SRR9715742 | Root | 0.138 |
| SRR9715743 | Root | 0.083 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.000 |
| SRR8749028 | MeJA induced 9h | 0.000 |
| SRR8749029 | MeJA induced 9h | 0.000 |
| SRR8749030 | Uninduced | 0.000 |
| SRR8749031 | Uninduced | 0.000 |
| SRR8749032 | Uninduced | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 0.135 |
| SRR8400027 | Control - Root | 0.116 |