Gene detail information of Glyur001321s00031437 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G79900.1 | 7.00E-110 | Mitochondrial substrate carrier family protein |
| NR | XP_003604475.1 | 0 | Mitochondrial carnitine/acylcarnitine carrier protein [Medicago truncatula] |
| Swissprot | tr|Q9CA93|BAC2_ARATH | 4.00E-146 | Mitochondrial arginine transporter BAC2 |
| trEMBL | tr|G7JJD6|G7JJD6_MEDTR | 0 | Carnitine/acylcarnitine carrier CACL-like protein {ECO:0000313|EMBL:AES86672.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold01321 | 20136 | 23161 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur001321s00031437.1 | PF00153.22 | Mito_carr | 13 | 94 | 6.40E-15 |
| Glyur001321s00031437.1 | PF00153.22 | Mito_carr | 112 | 191 | 3.60E-20 |
| Glyur001321s00031437.1 | PF00153.22 | Mito_carr | 205 | 292 | 5.10E-26 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 12.327 |
| SRR1783600 | control | 12.374 |
| SRR1783602 | moderate drought stress | 9.244 |
| SRR1811619 | moderate drought stress | 8.753 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 23.673 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 22.618 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 15.798 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 15.505 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 25.828 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 25.890 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 2.249 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 2.236 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 18.656 |
| SRR2868004 | Drought Stress (root) | 25.645 |
| SRR2967015 | Control (root) | 30.061 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 2.892 |
| SRR9715740 | Leaf | 1.405 |
| SRR9715741 | Leaf | 4.905 |
| SRR9715739 | Root | 3.747 |
| SRR9715742 | Root | 7.508 |
| SRR9715743 | Root | 6.787 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 5.914 |
| SRR8749028 | MeJA induced 9h | 16.349 |
| SRR8749029 | MeJA induced 9h | 10.622 |
| SRR8749030 | Uninduced | 35.710 |
| SRR8749031 | Uninduced | 21.422 |
| SRR8749032 | Uninduced | 19.992 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 22.036 |
| SRR8400027 | Control - Root | 23.981 |