Gene detail

Gene detail information of Glyur001321s00031433

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G08850.1	1.00E-122	Leucine-rich repeat receptor-like protein kinase family protein
NR	XP_003596118.1	0	Receptor protein kinase-like protein [Medicago truncatula]
COG	YP_004775215.1	6.00E-67	RHS repeat-associated core domain-containing protein [Cyclobacterium marinum DSM 745]
Swissprot	tr\|Q8VZG8\|Y4885_ARATH	5.00E-170	Probable LRR receptor-like serine/threonine-protein kinase At4g08850 (Precursor)
trEMBL	tr\|A0A072TRC9\|A0A072TRC9_MEDTR	0	LRR receptor-like kinase family protein {ECO:0000313\|EMBL:KEH19363.1}

Sequence

Transcript Sequence

>Glyur001321s00031433.1
ATGATCATGGTCATGGGTACTCATTCTGCGACTGCACCATCACCATCGCAGCTTCAACAGGAAGCCAATGCTATCCGCACTAGTGGATGGTGGAACACCTCCGATCCGTACTTCAATATCTCCCATCGCTGTCACTGGTCTGATATACTTTGCAACAAGGATGGAAGGATTATCCCGCCACAAATTGGTACTCTCTCCAAACTCACTCATCTCGATTTGTCCTACACTAATCTTGAAGGTGAGATGCCTCCTTCCCTAGGAAATCTTAGCCAATTAGAGCACCTAGTCATCTCCAACAACTACATTCAAGGTTCCATTCCTCCTGAGTTGGGGTTCCTGAAAAATCTCACTGCATTAGATCTATCTTATAATAGAATCAATGGTAGCTTACCTATTTTCCTTACAACTCTCACTCGATTAGAAGGGCTTAACATTTCCAACAACCTTCTTAGTGGTTCCCTCCCTTTTAATTTCGGTCAATTATCCAAATTGCGAGAGTTGTGTCTACATAGCAACTCCATCAGTGGCACCTTGCCTACTTCACTTGCAAATCTTACCCATTTAAAAGGGCTTGACATTTCCAACAACCTTCTCAATGGTTCCCTCCCTTCTAATTTCGGTCAATTATCCAAATTGCGAGAGTTGCGGCTCGGTAACAACTTCATCAGTGGCACCTTGCCTACTTCACTTGCAAATCTCACCCATTTAGAAGGGCTTGACATTTCCAACAATCTTCTCAGTGGTTCCCTCCCTTCTAATTTCGGTGAATTATCCAAATTGCGAGAGTTGCGGCTACATGAAAACTCCATCAGTGGCACCTTGCCTATTTCCCTTGCAAACCTCACCCAGTTAGAGCTTCTTGACATTTCCAACAATCTTCTCAGTGGTTCCCTTCCTTCTAATTTCGGTCAATTATCCAAATTGCGAGAGTTGTGGCTACGTAACAACTCCATCAGTGGCACCTTGCCTACTTCACTTGCAAATCTCACCCGGTTAGAGTCGCTTCATATGTCCAACAATCATCTCAATGGTTCCCTCCCTTCTGATTTCGGTCAATTATCCAAGTTGCGAGAGTTGTGGCTACGTAACAACTCCATCAGTGGCACCTTGCCTACTTCACTTGCAAGTCTCACCCAGTTACAGTCGCTTGACATTTCCAACAATTTACTCATTGGTTCCCTCCCGCCCAACCTCATTTATGGTGAAATACCATTTCAGCTTGGATATCATTCTCTACAAAATCTGGATTTAAGCTACAATAACCTCACTGGAACGGTTCCCGAATATCTCTGTGCTGTCTCATTTGTGAACATTTCCTACAATCATTTGAAGGGTCCCATTCCATACTGTGTCGATCCTCGTGCCCTATTAGGGAACAAGGATTTATGTTCCACTGTTTCAGATATCGAAATTCGATTCCAAGTCTTCCTACCATGCACACCTCGCAGCAACATCACAAGTAACAAAGAAAGCAAGACAAGTTTCAAAGTACTACACAATCTAGTCATAGCTCTTCCTATCCTCATTATTCTAATCCTAGCCTTCTCACTATTCATGTGTTTGAAGCGTCATAATAACACTGTAATTAAGAGCAAAAATGCAAACACAATGACAAATAAGAATGGGGATTTGTTCTGTGTTTGGAATTACGATGGAAAAATAGCATACGATGACATCATCAGTGCAACAAATGACTTTGACTTGAAGTACTGCATTGGAACAGGAGCATATGGGAGTGTTTACANGGCACAATTACCTAGNGGCAAAGTTGTTGCCTTGAAGAAACTCCACGGCTATGAAGCAGAGGTGCCAGCTTTTGATGAGAGTTTTAGAAATGAAGTTAGAGTATTGTNAGAAATAAAGCATCGGCATATTGTGAAGCTTCACGGATNCTGCTTGCACAGAAGGGTCATGTTTTTGATCTATGAGTACATGGAGAAAGGAAGCTTGTTCTCTGTCTTGTTTGATGATGCGGAAGCAATGGAATTGGAATGGAAAAAGAGGGTTGAGATTGTTAAAGGAGTTGCACTTGCTCTGTCGTATCTNCATCATGACTGCACCCCTCCAATAGTGCATAGAGANATAGCTACCACCAACATCTTGCTTAACTCTNAGTGGCAGCCCAGTGTTGCTGACTTTGGAATAGCCCGACTCCTCCAACATGATTCATCCAATCGAACAATAGTTGCTGGTACTATTGGATATATAGCTCCGGAGCTTGCCTATACTATGGTTGTGAGTCAAAAGTGTGATGTGTATAGCTTTGGAGTAGTGGCACTTGAAACCTTAGTGGGAAGGCATCCTGAGGAAATATTGTCATCACTTCAATCACCATCAACTCAAGGCATAAAATTATGTGAAGTGTTGGACCAACGACTCCCATTGCCA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold01321	3	2752	-

Gene family

Gene family	subfamily
Protein Kinases Family	PPC:1.9.2

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006468 protein phosphorylation

molecular_function

GO:0004672 protein kinase activity

GO:0005515 protein binding

GO:0005524 ATP binding

GO:0016772 transferase activity, transferring phosphorus-containing groups

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001321s00031433.1	PF13855.1	LRR_8	66	126	2.20E-08
Glyur001321s00031433.1	PF00560.28	LRR_1	187	209	1.2
Glyur001321s00031433.1	PF13855.1	LRR_8	210	270	3.20E-07
Glyur001321s00031433.1	PF00560.28	LRR_1	283	305	0.21
Glyur001321s00031433.1	PF12799.2	LRR_4	307	343	6.50E-09
Glyur001321s00031433.1	PF12799.2	LRR_4	355	395	1.30E-07
Glyur001321s00031433.1	PF00560.28	LRR_1	411	430	0.059
Glyur001321s00031433.1	PF00069.20	Pkinase	568	769	8.90E-41

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.883
SRR1783600	control	0.846
SRR1783602	moderate drought stress	0.102
SRR1811619	moderate drought stress	0.093

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	2.285
DRR006520	Root Summer glycyrrhizin high producing strain	2.318
DRR006521	Root Winter glycyrrhizin high producing strain	0.303
DRR006522	Root Winter glycyrrhizin high producing strain	0.219
DRR006523	Root Summer glycyrrhizin low producing strain	0.092
DRR006524	Root Summer glycyrrhizin low producing strain	0.107
DRR006525	Leaf Summer glycyrrhizin high producing strain	6.143
DRR006526	Leaf Summer glycyrrhizin high producing strain	6.088

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	0.651
SRR2868004	Drought Stress (root)	2.004
SRR2967015	Control (root)	2.686

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	4.205
SRR9715740	Leaf	23.904
SRR9715741	Leaf	5.983
SRR9715739	Root	17.795
SRR9715742	Root	8.876
SRR9715743	Root	10.692

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.089
SRR8749028	MeJA induced 9h	0.224
SRR8749029	MeJA induced 9h	0.076
SRR8749030	Uninduced	0.200
SRR8749031	Uninduced	0.032
SRR8749032	Uninduced	0.048

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	1.321
SRR8400027	Control - Root	2.708