Gene detail information of Glyur001320s00044385 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G51670.1 | 1.00E-172 | SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein |
| NR | KEH28820.1 | 0 | SEC14 cytosolic factor family protein [Medicago truncatula] |
| Swissprot | tr|Q9SCU1|PATL6_ARATH | 0 | Patellin-6 |
| trEMBL | tr|A0A072USI1|A0A072USI1_MEDTR | 0 | SEC14 cytosolic factor family protein {ECO:0000313|EMBL:KEH28820.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold01320 | 41785 | 44865 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur001320s00044385.1 | PF03765.10 | CRAL_TRIO_N | 85 | 145 | 1.30E-08 |
| Glyur001320s00044385.1 | PF00650.15 | CRAL_TRIO | 167 | 328 | 7.50E-31 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 16.980 |
| SRR1783600 | control | 17.325 |
| SRR1783602 | moderate drought stress | 12.281 |
| SRR1811619 | moderate drought stress | 12.060 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 15.014 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 14.837 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.550 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.481 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 12.898 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 12.883 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 2.258 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 2.235 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 39.095 |
| SRR2868004 | Drought Stress (root) | 17.050 |
| SRR2967015 | Control (root) | 23.711 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 6.131 |
| SRR9715740 | Leaf | 1.249 |
| SRR9715741 | Leaf | 1.536 |
| SRR9715739 | Root | 12.327 |
| SRR9715742 | Root | 17.487 |
| SRR9715743 | Root | 13.524 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 50.995 |
| SRR8749028 | MeJA induced 9h | 21.671 |
| SRR8749029 | MeJA induced 9h | 22.388 |
| SRR8749030 | Uninduced | 3.229 |
| SRR8749031 | Uninduced | 0.220 |
| SRR8749032 | Uninduced | 1.900 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 36.699 |
| SRR8400027 | Control - Root | 28.676 |