Gene detail

Gene detail information of Glyur001319s00033788

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G69523.1	2.00E-88	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein
NR	XP_004490089.1	0	PREDICTED: methyltransferase-like protein 7A-like [Cicer arietinum]
COG	YP_007126539.1	1.00E-50	Methyltransferase type 11 [Gloeocapsa sp. PCC 7428]
Swissprot	tr\|O82427\|SMT2_ORYSJ	1.00E-08	24-methylenesterol C-methyltransferase 2
trEMBL	tr\|I3SD82\|I3SD82_LOTJA	1.00E-178	Uncharacterized protein {ECO:0000313\|EMBL:AFK38224.1}

Sequence

Transcript Sequence

>Glyur001319s00033788.1
GAAAATCTAATAATTAATTAACGGTAGTATGAATCTTCNTCCTACTCTTATTTAAAAATGCTAGTGTAAGAAAATTAACACATTAACATCACCCGCATCCAAGTCCTAGAATGAATCTTCATTCTCTACGTCTTCCTGCAACGACANTGTCATTGGTTTCCTTCACTCCCAAAGCCATCAACGAAGACACCCACAATTATCGCATGATACCGAAACGGGTCGACCCGGGCGCTCCAAACAAACTCAGCACCGAGTTTCTCCTTCCTAACTCGCCGGAACCCACCACCAAACCATGCCTCTGTGGAAGAAGGCACTTCATAGAAGCTGCAACACTTGGAGCTACACGGTTCCCAATTCAGCCCGCCAGAGCCACAAATTCAGATTCTGATTACCCTGCTTTGGTTAACAAGTATCACCCTCCAAAACCTGGTTGGTACGAAGAGTTATATGCTTGGGTTTTGAACTCAGCTACTAAGTCATATGAAGCTGAGGTTGCTCGGTACAAGTCTCAAATCTTCAGCAACTTGAAGGGGAAGGCTAACAAAATCTTGGAGATTGGCATTGGAACCGGTCCTAACCTCAGTTATTATGCCAGTGATTCTGATGTGCAGGTTGTTGGCATTGATCCAAACCCCAAGATGGAAAAGTATGCTCGGTCCGCGGCTGCATCAGCTGGATTGCCGCTTTCGAATTTCGAGTTTGTACATGCTGTCGGGGAGGTTATACCATTAGGTGATGCTTCAGTCGACGCGGTTGTTGGAACACTTGTATTGTGTTCTGTTAAAGATGTTGATATGACATTGAAAGAAGTGAGGAGGGTGCTGCGACCTGGTGGCTTGTATGTGTTTGTGGAACATGTAGCTGCAAAAGATGGAACATTTCTCAGATTTCTACAGAGAGTTCTTGATCCTCTGCAACAGACAGTTGCAGATGGGTGTCATCTTTCTAGGGAAACAGGGGACAACATATCAAGAGCTGGATTTTCAAGTGTTGATCTTGAAATGGCATTCTTATCANAAGCTTCATTTGTAAACCCCCATGTATATGGAATAGCCTACAAGTAGGATCAAAAGCTTGTCTTTGATCCGCCGGTTTAGATGCTTTGAAAGGATTGCAGCCATTTTCAGGTACTTACACTAGAGTGCAGGTTTCAACACAAAAGACCCATTAAGTGGTCACTGACTCACTCTCACTTTGAAGCTCTGCTGTATAGTGTACAACCATCTATTTTTATATACTTGAAGTTAGTTTATTAGTTTATAGTAGTGTATAATCATCAACCATATAAACCTTTTCATATGGCCCTTTTTATATACTTGAAGTTGAAGCTTTTACAGCAACAGGTAACTTCTTATTTGGGGGGGCATGTTGTAAATGATCAAGCATGTATATAGCAGAAGTTAATAAACAATTAAACAGGAGAACTTTTCTTGTATAATTCTGCTTGAACTTAGTGTGAATGTGACTAAACAAGAACACGTGTGTACACAATATTTTTGGTCGTGAGATCTTGTT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold01319	40408	44123	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0008152 metabolic process

molecular_function
GO:0008168 methyltransferase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001319s00033788.1	PF08241.7	Methyltransf_11	147	246	3.80E-20

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	18.368
SRR1783600	control	17.740
SRR1783602	moderate drought stress	14.068
SRR1811619	moderate drought stress	13.855

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	7.579
DRR006520	Root Summer glycyrrhizin high producing strain	7.789
DRR006521	Root Winter glycyrrhizin high producing strain	9.845
DRR006522	Root Winter glycyrrhizin high producing strain	9.900
DRR006523	Root Summer glycyrrhizin low producing strain	10.704
DRR006524	Root Summer glycyrrhizin low producing strain	9.802
DRR006525	Leaf Summer glycyrrhizin high producing strain	23.797
DRR006526	Leaf Summer glycyrrhizin high producing strain	23.310

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	41.963
SRR2868004	Drought Stress (root)	73.939
SRR2967015	Control (root)	64.950

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	23.530
SRR9715740	Leaf	23.804
SRR9715741	Leaf	28.041
SRR9715739	Root	11.771
SRR9715742	Root	13.856
SRR9715743	Root	13.889

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	9.322
SRR8749028	MeJA induced 9h	22.544
SRR8749029	MeJA induced 9h	13.119
SRR8749030	Uninduced	36.978
SRR8749031	Uninduced	89.747
SRR8749032	Uninduced	30.189

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	35.980
SRR8400027	Control - Root	41.968