Gene detail information of Glyur001319s00033782 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G14150.1 | 2.00E-51 | PsbQ-like 2 |
| NR | AFK38240.1 | 6.13E-105 | unknown [Lotus japonicus] |
| Swissprot | tr|Q9XI73|PQL1_ARATH | 2.00E-64 | PsbQ-like protein 1, chloroplastic (Precursor) |
| trEMBL | tr|I3SD98|I3SD98_LOTJA | 2.00E-105 | Uncharacterized protein {ECO:0000313|EMBL:AFK38240.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold01319 | 3663 | 5588 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur001319s00033782.1 | PF05757.6 | PsbQ | 51 | 212 | 8.60E-47 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.000 |
| SRR1783600 | control | 0.000 |
| SRR1783602 | moderate drought stress | 0.042 |
| SRR1811619 | moderate drought stress | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.000 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.000 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.127 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.126 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 181.250 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 176.883 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 0.362 |
| SRR2868004 | Drought Stress (root) | 0.199 |
| SRR2967015 | Control (root) | 0.059 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 103.675 |
| SRR9715740 | Leaf | 163.282 |
| SRR9715741 | Leaf | 69.987 |
| SRR9715739 | Root | 0.000 |
| SRR9715742 | Root | 0.000 |
| SRR9715743 | Root | 0.140 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.000 |
| SRR8749028 | MeJA induced 9h | 0.075 |
| SRR8749029 | MeJA induced 9h | 0.000 |
| SRR8749030 | Uninduced | 0.000 |
| SRR8749031 | Uninduced | 0.000 |
| SRR8749032 | Uninduced | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 0.167 |
| SRR8400027 | Control - Root | 0.147 |