Gene detail information of Glyur001319s00033781 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G18720.1 | 1.00E-21 | Protein of unknown function (DUF962) |
| NR | AFK35600.1 | 6.74E-42 | unknown [Lotus japonicus] |
| trEMBL | tr|I3S5Q8|I3S5Q8_LOTJA | 3.00E-42 | Uncharacterized protein {ECO:0000313|EMBL:AFK35600.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold01319 | 602 | 953 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur001319s00033781.1 | PF06127.6 | DUF962 | 8 | 70 | 6.00E-11 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 7.049 |
| SRR1783600 | control | 6.975 |
| SRR1783602 | moderate drought stress | 8.778 |
| SRR1811619 | moderate drought stress | 9.128 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 4.006 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 2.700 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 5.875 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 4.967 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 3.914 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 3.279 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 13.879 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 13.080 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 11.753 |
| SRR2868004 | Drought Stress (root) | 12.293 |
| SRR2967015 | Control (root) | 15.608 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 31.023 |
| SRR9715740 | Leaf | 38.274 |
| SRR9715741 | Leaf | 40.970 |
| SRR9715739 | Root | 6.261 |
| SRR9715742 | Root | 9.436 |
| SRR9715743 | Root | 8.008 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.677 |
| SRR8749028 | MeJA induced 9h | 0.799 |
| SRR8749029 | MeJA induced 9h | 1.818 |
| SRR8749030 | Uninduced | 2.081 |
| SRR8749031 | Uninduced | 2.428 |
| SRR8749032 | Uninduced | 1.974 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 19.452 |
| SRR8400027 | Control - Root | 18.529 |