Gene detail information of Glyur001318s00036620 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G10200.1 | 0 | S-adenosyl-L-methionine-dependent methyltransferases superfamily protein |
| NR | KEH41447.1 | 0 | methyltransferase PMT16, putative [Medicago truncatula] |
| Swissprot | tr|Q84TJ0|PMT6_ARATH | 0 | Probable methyltransferase PMT6 |
| trEMBL | tr|A0A072VI32|A0A072VI32_MEDTR | 0 | Methyltransferase PMT16, putative {ECO:0000313|EMBL:KEH41447.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold01318 | 56128 | 62080 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur001318s00036620.1 | PF03141.11 | Methyltransf_29 | 105 | 489 | 5.40E-141 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 10.136 |
| SRR1783600 | control | 10.343 |
| SRR1783602 | moderate drought stress | 9.919 |
| SRR1811619 | moderate drought stress | 9.973 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 8.169 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 7.397 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 4.142 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 4.138 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 8.302 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 8.669 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 2.694 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 2.266 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 16.259 |
| SRR2868004 | Drought Stress (root) | 9.934 |
| SRR2967015 | Control (root) | 11.930 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 4.636 |
| SRR9715740 | Leaf | 2.437 |
| SRR9715741 | Leaf | 3.169 |
| SRR9715739 | Root | 4.503 |
| SRR9715742 | Root | 7.737 |
| SRR9715743 | Root | 7.746 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 8.032 |
| SRR8749028 | MeJA induced 9h | 8.752 |
| SRR8749029 | MeJA induced 9h | 3.523 |
| SRR8749030 | Uninduced | 1.900 |
| SRR8749031 | Uninduced | 1.099 |
| SRR8749032 | Uninduced | 1.343 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 12.481 |
| SRR8400027 | Control - Root | 13.380 |