Gene detail

Gene detail information of Glyur001318s00036614.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G47930.1	2.00E-126	L-galactono-1,4-lactone dehydrogenase
NR	XP_004515564.1	0	PREDICTED: L-galactono-1,4-lactone dehydrogenase, mitochondrial-like [Cicer arietinum]
Swissprot	tr\|Q9SU56\|GLDH_ARATH	0	L-galactono-1,4-lactone dehydrogenase, mitochondrial (Precursor)
trEMBL	tr\|G7I7B4\|G7I7B4_MEDTR	0	L-galactono-1,4-lactone dehydrogenase {ECO:0000313\|EMBL:AES60484.2}

Sequence

Transcript Sequence

>Glyur001318s00036614.1
ATGATAGCGAATAAGCATGTCAAGTACCTTTATATCCCTTATACCGACTATGTNGTGGTTGTGAGATGCAATCCTGTTTCAAAGTGGAGAGGTCCTCCCAAATTCAAACCAAAATATACTAAAGACGAAGCCATACAGCATGTGCGNGACCTATATAGGGAGTCCCTCCGGAAATATGGAGTGGAAGGGTCTCGGGGTAAACCATCAGATGATGAACAAAATATAGATGAGCTTTCTTTTACAGAATTAAGAGATAAGCTAATTGCCCTAGATCCTCTCAATAAAAATCACATTATGAAGGTCAATCAAGCTGAGGCTGAGTTCTGGAAGAAGTCAGAAGGATATAGGGTTGGATGGAGTGATGAAATATTGGGCTTTGATTGTGGAGGCCAACAGTGGGTTTCAGAGACATGTTTTCCTGCTGGAAAACTAGCTAAGCCAAGCATGAAAGACCTTGAATACATTGAAGAGCTGAAGCAACTTATAGAGAAAGAAGAGATACCTGCACCTGCTCCAATTGAGCAGCGATGGACAGCTAGCAGCAGGAGTCCCTTGAGTCCTGCTTCAAGCCCATCAGAGGATGATATATTTTCTTGGGTTGGTATAATCATGTACCTCCCCACNATGGATGCTCGGCAGAGAAAAGATATAACAGAAGAATTCTTTCATTACAGGCATCTGACTCGGACAAAACTATGGGATAATTACTCTGCTTATGAACACTGGGCAAAGATTGAGGTTCCAAAGGACAAGGATGAGCTTGTAGCTCTCCAAGCAAGGCTAAGAAAGCGGTTTCCTGTGGACGCATACAATAAGGCAAGAAGGGAATTGGACCCCAATAGGATCCTTTCGAATAACATGTTGGAAAAGCTGTTCCCACAATCGGAAACCATATAGAATTCTAGGTTGGTTATTTGTCTAAACTTTTCCCTTTTTGTTAGCTTTTCTTTTTCCAACTTTTAAGTTCTTGACTACAGCCACACATTTGGAACTNCAGGATGCAAATTATCTGGTGCACAATCAGGATTTTTATACATAAATACTTTACATTCCATCGTTCTCATCCCATCGAAAAGAGGAAGCATAAAGAAGGGGGAAAACTGGAGGACAAAAGTCTGCTGTTGATATAATCGTTCCTCTTTAGGCATGAACTGTGTCCCTCATGTTTGGTATTTGTGCATTTAATTTTGCAGGGAACTATGCAGTATGCACTTCCCCCTTGTTCTTCTAAGCCCATGTTATGCCAGAATTTATACATTTGGAGGTTTTAGGTAGTATCTTACTATCGGTGTTATGATCACATGATTTGTTCTCCCCCTTCTGACCTTAGGAAGATCTTGATTTTGACTACCTTGTTAGCAAGAGTTGTATTGGAAAGCAATTAATATTTATCCAAATAAATTAATTTGGAGGAAAGAG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold01318	536	4847	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K00225	GLDH	EC:1.3.2.3	Ascorbate and aldarate metabolism	map00053

Gene Ontology

biological_process
GO:0055114 oxidation-reduction process

cellular_component
GO:0016020 membrane

molecular_function

GO:0003885 D-arabinono-1,4-lactone oxidase activity

GO:0016633 galactonolactone dehydrogenase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001318s00036614.1	PF04030.9	ALO	108	290	1.80E-13

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	18.003
SRR1783600	control	17.970
SRR1783602	moderate drought stress	16.653
SRR1811619	moderate drought stress	17.077

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	25.953
DRR006520	Root Summer glycyrrhizin high producing strain	26.592
DRR006521	Root Winter glycyrrhizin high producing strain	10.220
DRR006522	Root Winter glycyrrhizin high producing strain	9.685
DRR006523	Root Summer glycyrrhizin low producing strain	29.115
DRR006524	Root Summer glycyrrhizin low producing strain	28.649
DRR006525	Leaf Summer glycyrrhizin high producing strain	19.598
DRR006526	Leaf Summer glycyrrhizin high producing strain	19.326

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	21.404
SRR2868004	Drought Stress (root)	17.100
SRR2967015	Control (root)	16.339

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	23.361
SRR9715740	Leaf	35.431
SRR9715741	Leaf	26.348
SRR9715739	Root	8.140
SRR9715742	Root	21.878
SRR9715743	Root	22.324

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	26.388
SRR8749028	MeJA induced 9h	17.634
SRR8749029	MeJA induced 9h	19.045
SRR8749030	Uninduced	3.603
SRR8749031	Uninduced	1.591
SRR8749032	Uninduced	2.382

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	24.391
SRR8400027	Control - Root	24.951