Gene detail information of Glyur001316s00033465.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G14685.3 | 2.00E-74 | basic pentacysteine 2 |
| NR | XP_003534122.1 | 2.04E-180 | PREDICTED: protein BASIC PENTACYSTEINE2-like isoformX1 [Glycine max] |
| Swissprot | tr|Q9SKD0|BPC1_ARATH | 2.00E-96 | Protein BASIC PENTACYSTEINE1 |
| trEMBL | tr|I1L405|I1L405_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA09G30040.4} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold01316 | 44627 | 46218 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | BBR-BPC |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur001316s00033465.1 | PF06217.7 | GAGA_bind | 21 | 306 | 2.90E-105 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 24.015 |
| SRR1783600 | control | 24.540 |
| SRR1783602 | moderate drought stress | 21.246 |
| SRR1811619 | moderate drought stress | 20.816 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 39.829 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 39.753 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 33.257 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 32.432 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 43.977 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 43.982 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 22.638 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 22.588 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 46.055 |
| SRR2868004 | Drought Stress (root) | 43.609 |
| SRR2967015 | Control (root) | 40.899 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 30.293 |
| SRR9715740 | Leaf | 27.806 |
| SRR9715741 | Leaf | 25.812 |
| SRR9715739 | Root | 40.572 |
| SRR9715742 | Root | 33.125 |
| SRR9715743 | Root | 32.024 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 103.572 |
| SRR8749028 | MeJA induced 9h | 56.340 |
| SRR8749029 | MeJA induced 9h | 87.670 |
| SRR8749030 | Uninduced | 34.214 |
| SRR8749031 | Uninduced | 47.478 |
| SRR8749032 | Uninduced | 52.302 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 42.943 |
| SRR8400027 | Control - Root | 44.243 |