Gene detail

Gene detail information of Glyur001314s00034329.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G40150.1	9.00E-101	Peroxidase superfamily protein
NR	XP_003628628.1	7.88E-172	Peroxidase [Medicago truncatula]
Swissprot	tr\|Q9FJR1\|PER65_ARATH	3.00E-123	Peroxidase 65 (Precursor)
trEMBL	tr\|G7LEQ9\|G7LEQ9_MEDTR	3.00E-172	Peroxidase family protein {ECO:0000313\|EMBL:AET03104.1}

Sequence

Transcript Sequence

>Glyur001314s00034329.1
CTTCTTTCCTTGATACAATCCCAGCTCACCCCTAACTACTACCAAAAATCATGTCCCAAATTCTCAGAGATTGTCAAGGAAACTGTGACCGAGAAGCAAAAATCAACGCCGGTCACAGCTGCCGCCACCCTCCGCCTCTTCTTCCATGACTGCATGATCGGCGGCTGTGATGCCTCCATCCTCGGGACAAGCAACAATTACAATGGGAAATGCATGTTACACAGAATCACACTTTTAAGCTTAAACAAATGGGCCTTAATAGTTAATATGTGCTTTGATTCTCGTGGGGTAGTTCAAGTTCTGGATGTTGGGTGTGGTGTGGCCAGTTTTTCAGCTTATCTACTTCCCTTGGATATCCGAAAAATGTCCTTTGCTCCCAAGGATAGTCATGAAAATCAGATTCAATTTGCATTAGAGCGTGGGATTCGTGCCATGATCTCTGCCTTGTCCACAAGCCAACTACCATTTCCTACCGGGTCATTTGAAATGTTTCAATGTTCAANATGCTGTATTGACTTTCATGAAAATGCCCAAAGACTAATAATAATAACAACAACAAGAACCATGACATATAACCCTCTTCTTTTCCTNTTCCTCTGTCTAGCCTTCTTTCCCTTGATACAATCCCAGCTCACCCCTAACTACTACCAAAAATCATGTCCCAAATTCTCAGAGATNGTCAAGGAAACTGTGACCGAGAAGCAAAAATCAACGCCGGTCACAGCTGCCGCCACCCTCCGCCTCTTCTTCCANGACTGCATGATCGGCGGCTGTGATGCCTCCATCCTCGTCACCTCCAACACCTACAACAAGGCGGAGCGCGATGCNGAAATCAACCTATCCCTCCCGGGGGATGGCTTCGACGTGGTCACGCGCGCGAAGAACACACTAGAGCTGGAATGCCCTGGCGTGGTCTCGTGCGCAGACATCCTTGCCGAGGCCACTCGCGACCTTGTCGTCATGGTTGGCGGGCCCTTTTACGAGCTGGGCCTGGGTCGAAAGGACAGCCTAGAGTCCAAGTCAATAGCCGTAGAAGGGCAGTACCCAGTGCCAACCATGACAATGTCCCAGGTGATATCCATCTTCAATTCCAAAGGGTTGAACGTGCAGGAGATGGTGGCTCTCACNGGTGCACACACCATAGGGTTCTCACATTGCAAGGAATTCAGCCAAAGGCTCTTCAACTTCAACAAGACCTCTGAATTCGACCCTGCGTATAAACCTGAGTATGCTGCGGGGCTGAGGAAGTTGTGTCANGACTATAAGAAGGACCCGTCCTTGTCAGCGTTCAATGACGTGATGACACCTAGCAAGTTTGACAACATGTACTANAGGAACTTAAAGAAAGGGCTTGGGCTTTTAGCCACCGATAGTGCNATGGTTGAGGATAAGAGGACCAAGCCCTTTGTGGATATGTATGCCGCGAACCAATCCAAGTTCTTTGAGGACTTTGCTCATGCCATGAATAAGTTCTCCTCCGCTAAGAACCACAAGTCACCGGTGGAAAAACTTAAGCCCAAATCTACAAACCAT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold01314	48841	56701	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K00430	E1.11.1.7	EC:1.11.1.7	Phenylpropanoid biosynthesis	map00940
			Phenylpropanoid biosynthesis	map00940
			Phenylpropanoid biosynthesis	map00940

Gene Ontology

biological_process

GO:0006979 response to oxidative stress

GO:0055114 oxidation-reduction process

molecular_function

GO:0004601 peroxidase activity

GO:0008168 methyltransferase activity

GO:0020037 heme binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001314s00034329.1	PF00141.18	peroxidase	26	62	2.80E-05
Glyur001314s00034329.1	PF03141.11	Methyltransf_29	89	180	1.10E-35
Glyur001314s00034329.1	PF00141.18	peroxidase	228	476	3.30E-61

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	2.084
SRR1783600	control	1.913
SRR1783602	moderate drought stress	1.414
SRR1811619	moderate drought stress	1.476

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.000
DRR006520	Root Summer glycyrrhizin high producing strain	0.069
DRR006521	Root Winter glycyrrhizin high producing strain	0.072
DRR006522	Root Winter glycyrrhizin high producing strain	0.070
DRR006523	Root Summer glycyrrhizin low producing strain	3.549
DRR006524	Root Summer glycyrrhizin low producing strain	3.163
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.383
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.563

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	0.135
SRR2868004	Drought Stress (root)	0.143
SRR2967015	Control (root)	0.016

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	2.563
SRR9715740	Leaf	1.667
SRR9715741	Leaf	2.218
SRR9715739	Root	0.539
SRR9715742	Root	0.369
SRR9715743	Root	0.318

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.000
SRR8749028	MeJA induced 9h	0.000
SRR8749029	MeJA induced 9h	0.000
SRR8749030	Uninduced	0.000
SRR8749031	Uninduced	0.000
SRR8749032	Uninduced	0.000

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	2.394
SRR8400027	Control - Root	1.775