Gene detail

Gene detail information of Glyur001314s00034327

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G70170.1	1.00E-102	matrix metalloproteinase
NR	XP_004509890.1	0	PREDICTED: metalloendoproteinase 1-like [Cicer arietinum]
COG	YP_006179981.1	4.00E-35	M10 family peptidase [Halobacillus halophilus DSM 2266]
Swissprot	tr\|P29136\|MEP1_SOYBN	6.00E-98	Metalloendoproteinase 1 (Precursor)
trEMBL	tr\|I1KXL7\|I1KXL7_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA08G40300.1}

Sequence

Transcript Sequence

>Glyur001314s00034327.1
ATGAATAAACACCACCAACTTCAACATCTCATATTCGCTTTCGCAATTTCCTTCTCTCTCACCGCAGCATTTGTTTCAGCTCGACTGTTTCCCAATGTCCCTTCCTCTTGGATACCGGCCAACGCGACTCCCGCCGGCGCGTGGGATGCCTTCCGCAACTTCTCCGGCTGCCACCGNGGCGAAAACTACGACGGCCTATCTAACCTCAAAAGCTACTTCCAGCACTTCGGATACATCCCCCACGNGCCGCCGTATAACTTCTCCAACGACTTCGACGACGCGCTAGAGGATGCAATAAAGACGTACCAGAAGAACTTCAACCTCAATGTCACCGGCGACCTCGACGACGAGACTCTCCGGCAGATTGTGAAACCGCGATGCGGCGTCGCCGACNTCATCAACNGTACAACAACCATGAACGCCGGCAAGGAGAACCAGACGGCGTCGAAGCCGCGGTTCCACACGGTGTCGCACTTCACCGTGTTCCCTGGCCAGCCGCGGTGGCCGGANGGGAGGGAGGAGCTCACGTACGCGTTCTTCCCCGGGAACGGTCTCAGCGACGCCGTGAAGGGAGTTTTCGCCNCCGCGTTCGCGCGGTGGTCGGAGGTTACGACGCTGAAGTTCAGCGAGACGGCGGCGTATTACGGCGCCGACATCAGGATCGGGTTCTTCAGCGGCGACCACGGCGACGGAGAGCCGTTCGACGGGAGTTTGGGAACGCTGGCGCACGCGTTCTCGCCGACGAACGGGAGGTTCCACCTTGACGCCGCCGAGGACTGGGTGGTTTCCGGCGACGTGACGCAGTCGGCGATNCCAACGGCGGTTGATTTGGAATCGGTGGCGGTGCACGAGATTGGGCACTTGCTAGGGTTAGGGCACTCGTCGGTGGAGGAGGCGATCATGTTTCCGACGATATCTTCGCGGACGAANAAGGTGGTGCTGGCGGAGGATGATATACTAGGAATTCAATACCTCTATGGCACAAACCCTAGCTTCAATGGCTTCACCGCCACGTCATCGCCGGAGAGAGGTTCCGGCAGCGGTGGTAGCCGCCTCACTTGTCTGGGTTCCCCGTGGGGCCTTTTCCTTTNTAGTACTCTTTACCATAATTCCACTTACTTCATTTGGTTCCACTTGATTTTAAAAGCTAAAGAGGAAACATAG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold01314	45494	46657	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006508 proteolysis

cellular_component
GO:0031012 extracellular matrix

molecular_function

GO:0004222 metalloendopeptidase activity

GO:0008237 metallopeptidase activity

GO:0008270 zinc ion binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001314s00034327.1	PF01471.13	PG_binding_1	66	121	1.80E-11
Glyur001314s00034327.1	PF00413.19	Peptidase_M10	173	327	2.40E-45

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	3.015
SRR1783600	control	3.050
SRR1783602	moderate drought stress	2.336
SRR1811619	moderate drought stress	2.277

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	6.064
DRR006520	Root Summer glycyrrhizin high producing strain	5.891
DRR006521	Root Winter glycyrrhizin high producing strain	0.126
DRR006522	Root Winter glycyrrhizin high producing strain	0.450
DRR006523	Root Summer glycyrrhizin low producing strain	17.097
DRR006524	Root Summer glycyrrhizin low producing strain	16.568
DRR006525	Leaf Summer glycyrrhizin high producing strain	28.745
DRR006526	Leaf Summer glycyrrhizin high producing strain	28.986

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	22.535
SRR2868004	Drought Stress (root)	39.366
SRR2967015	Control (root)	39.939

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	293.267
SRR9715740	Leaf	139.602
SRR9715741	Leaf	308.196
SRR9715739	Root	100.093
SRR9715742	Root	46.020
SRR9715743	Root	53.135

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	3.644
SRR8749028	MeJA induced 9h	1.838
SRR8749029	MeJA induced 9h	2.856
SRR8749030	Uninduced	5.164
SRR8749031	Uninduced	1.331
SRR8749032	Uninduced	2.065

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	13.234
SRR8400027	Control - Root	17.846