Gene detail

Gene detail information of Glyur001312s00042263

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G08290.1	3.00E-106	nodulin MtN21 /EamA-like transporter family protein
NR	XP_003601058.1	0	Auxin-induced protein 5NG4 [Medicago truncatula]
Swissprot	tr\|Q9SUF1\|WTR31_ARATH	5.00E-144	WAT1-related protein At4g08290
trEMBL	tr\|G7J316\|G7J316_MEDTR	0	Nodulin MtN21/EamA-like transporter family protein {ECO:0000313\|EMBL:AES71309.1}

Sequence

Transcript Sequence

>Glyur001312s00042263.1
CCAAAAGCATATAACTTTATAATAAGAAGAACAAAGATACTTATCCTCTTGCTCTCCATAATGCATGTTGTCTTAATCATCAATCTTGCGTGTTTATAAGGAAGCCCACTTTCACACATTTGGGAGCATCTCTCTAATTAGTGTTTTCAAACACTAGAAGCGTTTTTGTTTTTATTTTTCCATATTTTTCTCGAACACAAAAAACAGGATGGAAAATATGTGTGTTGCTAATTTTGGGAAGAAAATCACTAAGGCAAAGCCTTATTTATTATCGGTGGGACTGCAATTTGGGTTCGCGGGAGCATTGATATTCTCTATGGCCAGTTTCAACCATGGGATGAACCGTTTTGTGTTCATTGTTTATCGCAATGCGATTGCTTTTTTTGCCCTCGCTCCTTTTGCATTGGTTTTTGAAAGGAAAGTTAGGCCAAAGATGACAATCCCTGTATTTTTACAGATAATGGCGCTCGGATTTTTGGAGCCAGTGATTGATCAAGGGTTCACTTTCTTGGGAATGCAATATACCTCGGCTTCATTTGCATCAGCTATGATTAATGCTGTCCCTTCAGTCACGTTTGTGCTAGCCGTAATTTTCAGGATAGAGCGTGTAAATATTAAGCAGATACGGAGCGTAGCGAAGGTGATTGGGACGTTGGTAACCTTTGCTGGTGCTTTGTTAATGATACTTTACAAAGGCCCTCAAATCCACCTATTCTATTCCCCAAACACAACACACCACCAAGATGGACCGCAGAGTCTCCAACACTGGGTCTCTGGGACCCTCTTTCTCCTCCTGGGTTGCGTGGCTTGGTCATGTTTCTACATTTTACAGTCCAAAACGTTGAAAGGGTATCCGGCGGAAATGTCACTCTCCTCCTTAATATGCTTAGCGGGTGCTTTGCAAACTTCCGTGGTNGCATTGGTGGCGGAGCGTCGCTCTGGGGCTGGGGTGTGGGCCATCGGTTGGGACTTTCGCCTCTTTGGTCCTCTCTACACGGGAATAATTACCTCAGGAATAACATATTATGTGCAAGGGTTGGTATTGCAAAGCAAAGGCCCAGTATTTTTAACAGCGTTTAATCCCCTTTGCATGATCATCACTTCTGCTTTAGGCTCATTCCTTTTTGCAGAGCAACTTCACTTGGGCAGTATCATTGGAGCCATCATTATCGCAATGGGTCTTTATTCTGTGGTGTGGGGTAAAGGGAAAGACAATGTAGACACCACGACACCACCAGCTACAGCAAAGCAAACAGAGACACAACAGCTGCCAATTACCTCATCTGATGTCTAACACAAATTGCNGAAGGAACTTACAAATGGTGTGTTTTTGTTGCCTTAAAAATTCGCAGTAGCTATATGTATATCTATTTCATGCTTGAAATTTGCACGNTACGGATGGTATCATATAAATATTGCTACTATATACAGGCAGTATACATGC

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold01312	37470	44305	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

cellular_component

GO:0016020 membrane

GO:0016021 integral component of membrane

molecular_function
GO:0022857 transmembrane transporter activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001312s00042263.1	PF00892.15	EamA	30	159	8.70E-11
Glyur001312s00042263.2	PF00892.15	EamA	30	159	3.10E-11
Glyur001312s00042263.3	PF00892.15	EamA	18	81	7.90E-06

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.415
SRR1783600	control	0.782
SRR1783602	moderate drought stress	6.112
SRR1811619	moderate drought stress	5.432

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	29.504
DRR006520	Root Summer glycyrrhizin high producing strain	29.390
DRR006521	Root Winter glycyrrhizin high producing strain	0.000
DRR006522	Root Winter glycyrrhizin high producing strain	0.000
DRR006523	Root Summer glycyrrhizin low producing strain	52.668
DRR006524	Root Summer glycyrrhizin low producing strain	53.065
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.034
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.034

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	56.735
SRR2868004	Drought Stress (root)	140.120
SRR2967015	Control (root)	147.040

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	0.073
SRR9715740	Leaf	0.021
SRR9715741	Leaf	0.101
SRR9715739	Root	4.432
SRR9715742	Root	3.449
SRR9715743	Root	3.500

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.000
SRR8749028	MeJA induced 9h	0.000
SRR8749029	MeJA induced 9h	0.000
SRR8749030	Uninduced	0.000
SRR8749031	Uninduced	0.000
SRR8749032	Uninduced	0.021

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	6.657
SRR8400027	Control - Root	12.270