Gene detail information of Glyur001311s00029222 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT4G21880.1 | 2.00E-22 | Pentatricopeptide repeat (PPR) superfamily protein |
| NR | XP_007132964.1 | 4.06E-35 | hypothetical protein PHAVU_011G1400001g, partial [Phaseolus vulgaris] |
| Swissprot | tr|O49711|PP335_ARATH | 1.00E-24 | Pentatricopeptide repeat-containing protein At4g21880, mitochondrial (Precursor) |
| trEMBL | tr|K7KXP8|K7KXP8_SOYBN | 4.00E-36 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA06G41995.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold01311 | 71162 | 75333 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| -- | -- | -- | -- | -- | -- |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.000 |
| SRR1783600 | control | 0.012 |
| SRR1783602 | moderate drought stress | 3.247 |
| SRR1811619 | moderate drought stress | 3.251 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 5.525 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 5.550 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 3.003 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 2.965 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 6.382 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 6.100 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 2.502 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 2.496 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 13.517 |
| SRR2868004 | Drought Stress (root) | 13.840 |
| SRR2967015 | Control (root) | 12.045 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 0.000 |
| SRR9715740 | Leaf | 0.000 |
| SRR9715741 | Leaf | 0.000 |
| SRR9715739 | Root | 0.000 |
| SRR9715742 | Root | 0.000 |
| SRR9715743 | Root | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 4.531 |
| SRR8749028 | MeJA induced 9h | 4.613 |
| SRR8749029 | MeJA induced 9h | 5.368 |
| SRR8749030 | Uninduced | 2.177 |
| SRR8749031 | Uninduced | 5.344 |
| SRR8749032 | Uninduced | 2.347 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 0.042 |
| SRR8400027 | Control - Root | 1.661 |