Gene detail information of Glyur001311s00029214 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT4G25520.1 | 4.00E-35 | SEUSS-like 1 |
| NR | KDP22321.1 | 9.80E-55 | hypothetical protein JCGZ_26152 [Jatropha curcas] |
| Swissprot | tr|Q0WVM7|SLK1_ARATH | 5.00E-38 | Probable transcriptional regulator SLK1 |
| trEMBL | tr|I1L3D5|I1L3D5_SOYBN | 2.00E-55 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA09G26960.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold01311 | 27501 | 36661 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur001311s00029214.1 | PF01803.11 | LIM_bind | 253 | 311 | 3.30E-06 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.207 |
| SRR1783600 | control | 0.242 |
| SRR1783602 | moderate drought stress | 0.536 |
| SRR1811619 | moderate drought stress | 0.671 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 4.561 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 4.483 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 1.788 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 1.717 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 5.155 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 4.846 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 3.184 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 2.765 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 5.538 |
| SRR2868004 | Drought Stress (root) | 8.539 |
| SRR2967015 | Control (root) | 6.586 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 0.020 |
| SRR9715740 | Leaf | 0.009 |
| SRR9715741 | Leaf | 0.030 |
| SRR9715739 | Root | 0.000 |
| SRR9715742 | Root | 0.028 |
| SRR9715743 | Root | 0.009 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 5.065 |
| SRR8749028 | MeJA induced 9h | 7.995 |
| SRR8749029 | MeJA induced 9h | 3.942 |
| SRR8749030 | Uninduced | 8.168 |
| SRR8749031 | Uninduced | 8.430 |
| SRR8749032 | Uninduced | 5.646 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 0.167 |
| SRR8400027 | Control - Root | 0.140 |