Gene detail information of Glyur001311s00029213 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT4G20090.1 | 3.00E-20 | Pentatricopeptide repeat (PPR) superfamily protein |
| NR | XP_006588285.1 | 2.27E-47 | PREDICTED: pentatricopeptide repeat-containing protein At1g63080, mitochondrial-like [Glycine max] |
| Swissprot | tr|O49436|PP327_ARATH | 1.00E-22 | Pentatricopeptide repeat-containing protein At4g20090 |
| trEMBL | tr|A0A072UBQ1|A0A072UBQ1_MEDTR | 6.00E-45 | Pentatricopeptide (PPR) repeat protein {ECO:0000313|EMBL:KEH26871.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold01311 | 26504 | 27044 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur001311s00029213.1 | PF13041.1 | PPR_2 | 8 | 57 | 5.30E-16 |
| Glyur001311s00029213.1 | PF12854.2 | PPR_1 | 74 | 106 | 1.30E-08 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.188 |
| SRR1783600 | control | 0.164 |
| SRR1783602 | moderate drought stress | 0.150 |
| SRR1811619 | moderate drought stress | 0.273 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 2.212 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 2.097 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.329 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.268 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.641 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.399 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 1.466 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 1.510 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 4.487 |
| SRR2868004 | Drought Stress (root) | 6.570 |
| SRR2967015 | Control (root) | 4.893 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 0.000 |
| SRR9715740 | Leaf | 0.000 |
| SRR9715741 | Leaf | 0.000 |
| SRR9715739 | Root | 0.000 |
| SRR9715742 | Root | 0.000 |
| SRR9715743 | Root | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 1.626 |
| SRR8749028 | MeJA induced 9h | 2.740 |
| SRR8749029 | MeJA induced 9h | 2.765 |
| SRR8749030 | Uninduced | 2.493 |
| SRR8749031 | Uninduced | 6.034 |
| SRR8749032 | Uninduced | 0.981 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 0.025 |
| SRR8400027 | Control - Root | 0.113 |