Gene detail

Gene detail information of Glyur001310s00030814

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G74170.1	5.00E-156	receptor like protein 13
NR	KEH36601.1	0	LRR receptor-like kinase family protein [Medicago truncatula]
COG	YP_001192956.1	1.00E-36	two component regulator [Flavobacterium johnsoniae UW101]
Swissprot	tr\|C0LGQ5\|GSO1_ARATH	2.00E-72	LRR receptor-like serine/threonine-protein kinase GSO1 (Precursor)
trEMBL	tr\|A0A072V4K8\|A0A072V4K8_MEDTR	0	LRR receptor-like kinase family protein {ECO:0000313\|EMBL:KEH36601.1}

Sequence

Transcript Sequence

>Glyur001310s00030814.1
ATGGGGAGGCTATTTGTCAAACATCCCTTGTGGATCGTTGTTGTTTTGTTTCTTGTGAAGGAATCAGAAGGGTGTTTGGAGAATGAGAGGTTGGGTCTGTTAGANCTCAAAACTTTCTTGATTTCAAACAGTGACAGTGACAACAACAATCTTCCATCATGGGTTGATAATGATAGTGAGGCAGCAGATTGTTGTGTATGGGAGGGTGTCAAGTGCAATCACACCACAGNACATGTCATGGATCTCTTGCTTGGAGGGGTTGCAAGCTATAAAGCTGAAGCTTGGTTCCTGAACTTTTCATTTTTTCTTCCTTTCCAGCATTTAATAGATCTTGACTTATCAGCTAACTATTTTGATGGTTGGGAGCTGGATCTCAGCAGGAATGGAATGAGTGGTCATTTTCCGCAGTGCCTTAGCAACTTGACAGACCTCAGAGTACTTGATTTATCATCAAATAATTTCAATGGAAGTATTCCATCTTTCATNAGTAGTCTCAAGTCTCTTGAATATCTATCTCTCTTTGACAACAAGTTTGATGGACTTTTCTCATTCAGTTCTTTGGCCAATCATTCTAAACTTGAGGTTTTCCTGTTGTCACCAACAACACATAACCTGTANGTAGAAACTGAGAGTCCATCATGGCATCCCACGTTTCAATTGAAAGTCCTCCAACTAAGAAATTGCTATTTGAATTCAAGGACAAATAGAGTTTTTCCAAGTTTTCTNCTTTACCAGCATGAGCTACAAGTAATTGACCTTTCTCATAACAAAATAGAAGGGGACTTTCCCTCTTGGCTCTTGCAGAATAACACAGAGTTGGAGACCTTGTATTTGATGAACAACTCATTCACAGGAACTCTGCAGCTTCCCACCTTCAAACATGGTTTGTTGGACCTACAAGTTTCAAATAACAAGATTGGTGGTCAACTCCCAGAGAATATAGGTGACATATTTTCAACTCTATTTTATGTGAACCTGTCTAGGAATGGTTTTGAAGGTAACCTTCCATCATCCATGAGTGAAATGAAAACAATAAGGACTCTGGACTTATCCAATAACAACTTCTCTGGGGTGCTTACTAGGCATTTGGTCTCCAATTGGACCTCATTGTTACTACTGAGGCTGTCTCACAATAGGTTCCATGGACCTGTTATTCCAATGCTTTCAAACTTAACAAGATTGCGATGGTTGTACTTGAACAACAACTCCTTTAGTGGGGACATTGAAGATGGAGTATCAAACAAATCTTCTTTATATACCTTGGACATATCAAACAACATGATATCTGGCAGGATTCCAAGGTGGATTAGCAGCTTCACAGCACTTGGGGTACTTTCACTGTCGAAGAATCGGTTACATGGTGACATCCCTANTGAGCTTTGCAACCTATTTTCCCTTAGCTATTTGGACATTTCAGAAAATAACTTATCAGGGCNTTTGCCTTCTTGCTTTGATAATTTCTCCCTCATGAAGTTCTTATACTTGCAAAAGAATTCTCTCCAAGGCTACATACCAAATGCATTGGCTGAACTCACCAAATTAGCATCACTTGATCTAAGGGACAACGAGTTTTTTGGAAACATTCCNCACCGTATCAACGGGCTTTCAGAGTTAAGAGTGCTTTTATTGGCAGGGAATAAACTAACAGGTTCAATTCCTATCCAGTTGTGTGAACTACAACATGTCAAAATTATGGATCTTTCACATAATTGGCTTACTGAAGCAATACCTTCATGCTTTAAGAACATATCATTTCAAATGGTGGAGCATGAAAGTACTGCTGTGGGATCAAGAGCTGTGGAGAATTACTCAAATGATACAGTTGAGTATTNTATCAACACTGCATTGTCCATATTTCTAGTCGATGAAATCTGGTTCACCCCAGGAGATACCTTCCACATNTTCTACAACTCCTCTTTGAGCTTGAACCATCCTGTTGGAGACATGTACATGATATCTTATGAACAAGTAGAAGTGGAGTTCAGAACAAAGAGTTATTATCTCTCTTACAAGGGGACTAACCTGGACTTGATGACTGGATTGGATGTATCAAGTAATGAANTGAGTGGTAGCATCCCACCAGAGATTGGGGAACTAAGAGAAATTCTTGCCTTGAATCTTTCCCACAACCGGTTATCGGGATCTATACCTGAAAGCTTTTCCAATCTGATGAACATTGAGAGTTTAGACCTTTCCTACAATAATTTAAGTGGTGCCATACCTCCTAATCTGACTGAGTTGTACTCTTTAGCCATATTCAATGTCTCATACAACAACTTGTCAGGGACAACTCCAACCGCGGGGCAGTTTGCAAACTTTGATGAAGACAATTATAGAGGCAATTCACATCTTTGCGGATCGGTTCTCAATACAAGCTGCAACTTTTCGCCGCCAACACCGCCATATGAGGCAGCAGAAAATCAGACTGCAATTGATATGGGATCCTTCTACTGGGGTTTTGTTGCATCTTTTGTCACAGTGGTCATTGGGTTGGCAGTGATTCTTTGGTTCAATTCTCATTGGTGCAGGGCTTGGTTCCGTTTTGTTGATTTGTGTATATTTTATTGCTTCTCAAGTTACACCCCTTCCATGACCAGAGCATCGATCAATTGTAGTTTCTCCAATCTCATCATGTTTCTCGTGGCTGCATCAACACCACTGGTGGTGGATGCTGGTTAA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold01310	70353	74043	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0005515 protein binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001310s00030814.1	PF08263.7	LRRNT_2	27	73	1.80E-06
Glyur001310s00030814.1	PF13855.1	LRR_8	122	177	6.60E-07
Glyur001310s00030814.1	PF00560.28	LRR_1	248	269	0.086
Glyur001310s00030814.1	PF13516.1	LRR_6	343	357	0.69
Glyur001310s00030814.1	PF13855.1	LRR_8	465	523	4.90E-09
Glyur001310s00030814.1	PF13855.1	LRR_8	705	760	6.50E-07

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	3.251
SRR1783600	control	3.189
SRR1783602	moderate drought stress	2.430
SRR1811619	moderate drought stress	2.463

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.796
DRR006520	Root Summer glycyrrhizin high producing strain	0.834
DRR006521	Root Winter glycyrrhizin high producing strain	1.853
DRR006522	Root Winter glycyrrhizin high producing strain	1.964
DRR006523	Root Summer glycyrrhizin low producing strain	1.925
DRR006524	Root Summer glycyrrhizin low producing strain	1.814
DRR006525	Leaf Summer glycyrrhizin high producing strain	1.500
DRR006526	Leaf Summer glycyrrhizin high producing strain	1.558

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	8.137
SRR2868004	Drought Stress (root)	7.239
SRR2967015	Control (root)	9.081

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	0.651
SRR9715740	Leaf	0.537
SRR9715741	Leaf	0.390
SRR9715739	Root	0.846
SRR9715742	Root	1.825
SRR9715743	Root	1.305

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	1.543
SRR8749028	MeJA induced 9h	3.157
SRR8749029	MeJA induced 9h	1.211
SRR8749030	Uninduced	0.718
SRR8749031	Uninduced	0.315
SRR8749032	Uninduced	0.223

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	3.983
SRR8400027	Control - Root	4.114