Gene detail information of Glyur001310s00030813 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G73060.1 | 5.00E-143 | Low PSII Accumulation 3 |
| NR | XP_004507067.1 | 0 | PREDICTED: uncharacterized protein LOC101509864 [Cicer arietinum] |
| Swissprot | tr|Q8H0W0|LPA3_ARATH | 0 | Protein LOW PSII ACCUMULATION 3, chloroplastic (Precursor) |
| trEMBL | tr|I1KVM9|I1KVM9_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA08G23450.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold01310 | 64401 | 69364 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur001310s00030813.1 | PF09353.5 | DUF1995 | 84 | 347 | 2.10E-51 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 10.039 |
| SRR1783600 | control | 9.962 |
| SRR1783602 | moderate drought stress | 12.713 |
| SRR1811619 | moderate drought stress | 13.015 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 11.328 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 10.989 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 4.509 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 3.841 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 8.193 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 9.069 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 99.434 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 100.869 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 8.023 |
| SRR2868004 | Drought Stress (root) | 10.380 |
| SRR2967015 | Control (root) | 11.168 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 65.979 |
| SRR9715740 | Leaf | 87.464 |
| SRR9715741 | Leaf | 66.961 |
| SRR9715739 | Root | 3.842 |
| SRR9715742 | Root | 8.965 |
| SRR9715743 | Root | 7.302 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 6.370 |
| SRR8749028 | MeJA induced 9h | 7.695 |
| SRR8749029 | MeJA induced 9h | 4.069 |
| SRR8749030 | Uninduced | 2.240 |
| SRR8749031 | Uninduced | 0.690 |
| SRR8749032 | Uninduced | 1.026 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 13.436 |
| SRR8400027 | Control - Root | 15.513 |