Gene detail

Gene detail information of Glyur001310s00030812

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G62640.2	2.00E-118	3-ketoacyl-acyl carrier protein synthase III
NR	XP_003534651.1	3.50E-176	PREDICTED: 3-oxoacyl-[acyl-carrier-protein] synthase 3 A, chloroplastic-like [Glycine max]
COG	YP_001656961.1	1.00E-105	3-oxoacyl-ACP synthase [Microcystis aeruginosa NIES-843]
Swissprot	tr\|P49245\|FABH2_CUPWR	8.00E-161	3-oxoacyl-[acyl-carrier-protein] synthase 3 B, chloroplastic (Precursor)
trEMBL	tr\|I1L735\|I1L735_SOYBN	1.00E-176	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA09G41380.1}

Sequence

Transcript Sequence

>Glyur001310s00030812.1
ATGGTTCACTTGTCCTCCCTCTCATCCCCTCCCACTACTCCCACCAAACTTGTTTGCTTCAGTGTCCTCAACCATGCTTCCCAATCTCCCATACCCAGGGGTGTTAGTAAAGGCTGCAAGCTGGTTGGATGTGGTTCAGGTGTGCCAAGTCTTCAGATTTCTAATGATGACCTTGCAAAAGTAGTTGATACTTCTGATGAGTGGATAGTTTCTCGCACTGGGATTCGTAGACGGCGAGTTCTTTCAGGTGGAGAAAACTTGACAACTTTAGCAGTAGAGGCAGCAGGGAAAGCTCTCGAGATGGCAAAGATTTCAAAACAACTTGGCTGCAAAACACATCCATTGGCTTATAACATTACAGCTGCTTGTAGTGGATTTATCTTGGGTTTAATATCAGCCTCTTCTCACATCAAGGGGGCAGGATTTCATAATGTTCTAGTAATTGGGGCTGATGCTGTTTCACGGTTTGTTGATTGGACTGACAGAAGGACTTGTATTCTTTTTGGGGATGCTGCTGGTGCTGTACTAGTACAGGCTTGCAACTCTGAGGAAGATGGATTATTTGCTTTTGATTTGCATAGTGATGAAAACGAGGCTAACAACAACAACGCACCAAACACAAAAAATGGTTTTGAGCTAGAATTTCCTCCAAGGCTGTCTTCATATTCGTGCCTTCAAATGAATGGCAAAGAAGTGTTTCGCTTTGCAGTGCGAAATGTGCCACTGTCTGTTGAGTCAGCCCTTCAAAAAGCTGGTCTACCTATGTCCAGCATTGATTGGTTACTTCTCCATCAGGCAAACCAGAGGATCATTGATTCAGTTGCGGCAAGATTGGAAGTTCCATCAGAAAAGGTGATATCAAATGTGGCTGAGTATGGTAACACAAGCGCGGCTTCCATTCCCTTGGCTTTAGATGAATCAGTTCGAAGTGGGAAGGTTAAGGCAGGCCATATTATTGCAGCTGCTGGATTTGGTGCTGGTCTTACTTGGGGATCAGCAATCTTGAAATGGGGATGA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold01310	56947	62061	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K00648	fabH	EC:2.3.1.180	Fatty acid metabolism	map01212
			Fatty acid biosynthesis	map00061

Gene Ontology

biological_process

GO:0006633 fatty acid biosynthetic process

GO:0008152 metabolic process

GO:0008610 lipid biosynthetic process

molecular_function

GO:0003824 catalytic activity

GO:0004315 3-oxoacyl-[acyl-carrier-protein] synthase activity

GO:0016747 transferase activity, transferring acyl groups other than amino-acyl groups

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001310s00030812.1	PF08545.5	ACP_syn_III	118	195	1.20E-25
Glyur001310s00030812.1	PF08541.5	ACP_syn_III_C	248	337	6.20E-37

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.000
SRR1783600	control	0.000
SRR1783602	moderate drought stress	0.000
SRR1811619	moderate drought stress	0.000

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.000
DRR006520	Root Summer glycyrrhizin high producing strain	0.000
DRR006521	Root Winter glycyrrhizin high producing strain	0.000
DRR006522	Root Winter glycyrrhizin high producing strain	0.000
DRR006523	Root Summer glycyrrhizin low producing strain	0.216
DRR006524	Root Summer glycyrrhizin low producing strain	0.216
DRR006525	Leaf Summer glycyrrhizin high producing strain	6.991
DRR006526	Leaf Summer glycyrrhizin high producing strain	6.711

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	1.824
SRR2868004	Drought Stress (root)	1.407
SRR2967015	Control (root)	0.997

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	7.924
SRR9715740	Leaf	5.426
SRR9715741	Leaf	3.784
SRR9715739	Root	0.000
SRR9715742	Root	0.595
SRR9715743	Root	0.830

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.107
SRR8749028	MeJA induced 9h	0.004
SRR8749029	MeJA induced 9h	0.000
SRR8749030	Uninduced	0.031
SRR8749031	Uninduced	0.000
SRR8749032	Uninduced	0.066

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	0.783
SRR8400027	Control - Root	0.914