Gene detail

Gene detail information of Glyur001310s00030808

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G15980.1	7.00E-145	NDH-dependent cyclic electron flow 1
NR	XP_003604248.1	0	hypothetical protein MTR_4g007080 [Medicago truncatula]
COG	YP_007128402.1	4.00E-15	glycosyl transferase family 9 [Gloeocapsa sp. PCC 7428]
trEMBL	tr\|G7JEF5\|G7JEF5_MEDTR	0	NDH-dependent cyclic electron flow protein {ECO:0000313\|EMBL:AES86445.1}

Sequence

Transcript Sequence

>Glyur001310s00030808.1
CTAACTANAACTTTGTAACTTATCATCATCAGCACAAACCAAGGCAAAGAAAGGAAGCAACTTTGAAAAGCCCAATGGCTGCAGCTGCAGCTGCAACTTATTATTTACTGCCAAATCCAAAAGCTTTCTCACATTTCCTTAGAAACCCACCTTCCAAATCCATTCCTTCAAGCCATCCAACCCAAGTTTCATTATTGGGTTGTTGTAGTTCCACTACTAGGAGACCAAATGTTCATGCAAATGCCAAGAAGAAGAACCCATGGCTTGACCCTTTTGATGATGGGGAAGACCCCAACATGGAGTATGGATCCTTGTTTTCAGATGGTAAGCAAGATGAGGATACAAGGCCACCAGATGACCCAAACAACCCATATGGGTTCTTGAAATTCCCTGCTGGGTATGCAGTTGAAATAGCCTCCTTGGGGTTGAAAGTGAGAGGGGATGTTAGGAGGTGCTGCTGTGTGGTATCTGGTGGGGTTTATGAGAACCTCTTGTTCTTCCCAACCATACAGTTGATTAAGGATAGGTACCCTGGTGTTCAGATTGATGTGGTGGCATCAGAGAGAGGGAAACAGACNTATGAGTTGAATAAGAATGTGAGATGGGCAAATGCTTATGACCCTGATGATGAATTCCCNGAGCCTGCTGAGTATACTGATATGGTTGGAGTTCTAAAGAATAGGTACTATGACATGGTCTTGAGCACCAAATTGGCAGGCCTTGGCCATGCAGCATTTTTATTTATGACAACTGCCCGAGATAGAGTTAGCTATGTCTATCCAGATGTGAATGCTGCAGGAGCAGGCTTGCTTTTATCTGAAACATTCACACCCAGTGAAAAATTTCCAATGAGTTTGCTGAACTATAGGTATCATCAGATGGAAGACTGGCTTGGAAAACCATTCAGAAGTGTTCCAAGGACTCCTGTGCTACCACTTAGGGTATCAATTTCAAGGAAGCTGAAGGAGGTNGTGGAGGGAAAATACACAAAAGCAGGTGCAAAAAAGGGAAAATATGTTGTAATTCATGGGATACAATCAGATTCAAAGGCCTCTATGCAGTCTAGGGGTGATCCTGATAGCTTACTACCCATTGAAGTGTGGGCTGAAATTGCTGATGCCATAAGGGACTTTACGCCACTTTTTGTCATTCCACATGAGAAAGAAAGGGAAAATGTGGAAGAAATCATGGGAGAAGATGCCTCCATAGTCTTCATCACCACCCCTGGACAGAAGGGAAACAAGTTTGTTCCACGGGCTGAAGAGAAGAAATGCATTGTGATATCATCCAAGACGGAAAAGTTGATTGATATTGATGTTGAGGCTGTAAAAAATGCAATTCAAACTTTCAATGTGGCTCTAGCTTTTGCATAG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold01310	25101	29157	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

Not hits found.

Not hits found.

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
--	--	--	--	--	--

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.209
SRR1783600	control	0.200
SRR1783602	moderate drought stress	0.165
SRR1811619	moderate drought stress	0.141

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.211
DRR006520	Root Summer glycyrrhizin high producing strain	0.220
DRR006521	Root Winter glycyrrhizin high producing strain	0.325
DRR006522	Root Winter glycyrrhizin high producing strain	0.338
DRR006523	Root Summer glycyrrhizin low producing strain	0.043
DRR006524	Root Summer glycyrrhizin low producing strain	0.041
DRR006525	Leaf Summer glycyrrhizin high producing strain	111.242
DRR006526	Leaf Summer glycyrrhizin high producing strain	108.723

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	1.901
SRR2868004	Drought Stress (root)	2.385
SRR2967015	Control (root)	2.846

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	64.261
SRR9715740	Leaf	91.455
SRR9715741	Leaf	44.984
SRR9715739	Root	0.100
SRR9715742	Root	0.367
SRR9715743	Root	0.347

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	1.519
SRR8749028	MeJA induced 9h	1.106
SRR8749029	MeJA induced 9h	0.845
SRR8749030	Uninduced	0.103
SRR8749031	Uninduced	0.166
SRR8749032	Uninduced	0.088

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	1.141
SRR8400027	Control - Root	0.815