Gene detail information of Glyur001310s00030806.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G57970.2 | 3.00E-74 | DNA glycosylase superfamily protein |
| NR | XP_003530263.1 | 0 | PREDICTED: uncharacterized protein LOC100805836 [Glycine max] |
| COG | YP_006759958.1 | 6.00E-61 | DNA-3-methyladenine glycosylase I Tag [Desulfobacula toluolica Tol2] |
| trEMBL | tr|I1KGT2|I1KGT2_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA07G02620.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold01310 | 16359 | 20821 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| K01246 | tag | EC:3.2.2.20 | Base excision repair | map03410 |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur001310s00030806.1 | PF03352.8 | Adenine_glyco | 159 | 334 | 2.00E-63 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 3.732 |
| SRR1783600 | control | 3.704 |
| SRR1783602 | moderate drought stress | 2.981 |
| SRR1811619 | moderate drought stress | 3.051 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 6.533 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 6.469 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 1.890 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 1.816 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 5.793 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 5.885 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 1.925 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 1.911 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 8.234 |
| SRR2868004 | Drought Stress (root) | 6.489 |
| SRR2967015 | Control (root) | 7.944 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 4.051 |
| SRR9715740 | Leaf | 2.382 |
| SRR9715741 | Leaf | 1.676 |
| SRR9715739 | Root | 2.405 |
| SRR9715742 | Root | 5.758 |
| SRR9715743 | Root | 4.048 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 13.954 |
| SRR8749028 | MeJA induced 9h | 14.262 |
| SRR8749029 | MeJA induced 9h | 9.082 |
| SRR8749030 | Uninduced | 3.285 |
| SRR8749031 | Uninduced | 1.865 |
| SRR8749032 | Uninduced | 3.910 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 9.816 |
| SRR8400027 | Control - Root | 9.723 |