Gene detail information of Glyur001309s00032175 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G50130.2 | 1.00E-50 | NAD(P)-binding Rossmann-fold superfamily protein |
| NR | XP_006579577.1 | 1.86E-91 | PREDICTED: short-chain dehydrogenase TIC 32, chloroplastic-like isoform X2 [Glycine max] |
| COG | YP_004657396.1 | 1.00E-23 | short-chain dehydrogenase/reductase SDR [Runella slithyformis DSM 19594] |
| Swissprot | tr|Q6RVV4|TIC32_PEA | 3.00E-38 | Short-chain dehydrogenase TIC 32, chloroplastic |
| trEMBL | tr|I1K032|I1K032_SOYBN | 2.00E-91 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA05G02490.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold01309 | 38560 | 47764 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur001309s00032175.1 | PF00106.20 | adh_short | 40 | 149 | 6.10E-18 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 5.873 |
| SRR1783600 | control | 5.911 |
| SRR1783602 | moderate drought stress | 5.930 |
| SRR1811619 | moderate drought stress | 5.946 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 17.673 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 17.484 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 3.933 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 3.822 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 11.750 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 12.362 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.093 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.188 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 13.559 |
| SRR2868004 | Drought Stress (root) | 31.023 |
| SRR2967015 | Control (root) | 12.330 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 0.586 |
| SRR9715740 | Leaf | 0.018 |
| SRR9715741 | Leaf | 0.172 |
| SRR9715739 | Root | 1.149 |
| SRR9715742 | Root | 7.460 |
| SRR9715743 | Root | 5.597 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.561 |
| SRR8749028 | MeJA induced 9h | 1.127 |
| SRR8749029 | MeJA induced 9h | 1.027 |
| SRR8749030 | Uninduced | 1.920 |
| SRR8749031 | Uninduced | 1.937 |
| SRR8749032 | Uninduced | 1.280 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 19.983 |
| SRR8400027 | Control - Root | 24.903 |