Gene detail information of Glyur001309s00032174 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G48210.1 | 1.00E-46 | |
| NR | XP_006579576.1 | 1.63E-167 | PREDICTED: uncharacterized protein LOC100776032 [Glycine max] |
| trEMBL | tr|K7KMS7|K7KMS7_SOYBN | 5.00E-169 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA05G02480.2} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold01309 | 33306 | 37539 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur001309s00032174.1 | PF08234.7 | Spindle_Spc25 | 148 | 220 | 3.60E-22 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 4.849 |
| SRR1783600 | control | 4.968 |
| SRR1783602 | moderate drought stress | 3.462 |
| SRR1811619 | moderate drought stress | 3.434 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 5.962 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 5.797 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 1.702 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 1.461 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 5.404 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 5.669 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 5.173 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 4.922 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 15.112 |
| SRR2868004 | Drought Stress (root) | 12.949 |
| SRR2967015 | Control (root) | 13.683 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 3.604 |
| SRR9715740 | Leaf | 5.292 |
| SRR9715741 | Leaf | 4.840 |
| SRR9715739 | Root | 0.147 |
| SRR9715742 | Root | 1.337 |
| SRR9715743 | Root | 1.271 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 15.866 |
| SRR8749028 | MeJA induced 9h | 16.239 |
| SRR8749029 | MeJA induced 9h | 7.616 |
| SRR8749030 | Uninduced | 4.426 |
| SRR8749031 | Uninduced | 3.817 |
| SRR8749032 | Uninduced | 2.109 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 9.128 |
| SRR8400027 | Control - Root | 7.996 |