Gene detail

Gene detail information of Glyur001309s00032169.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G26540.1	0	Leucine-rich repeat receptor-like protein kinase family protein
NR	KEH31809.1	0	LRR receptor-like kinase family protein [Medicago truncatula]
COG	YP_004775215.1	1.00E-66	RHS repeat-associated core domain-containing protein [Cyclobacterium marinum DSM 745]
Swissprot	tr\|C0LGR3\|Y4265_ARATH	0	Probable LRR receptor-like serine/threonine-protein kinase At4g26540 (Precursor)
trEMBL	tr\|A0A072UPQ0\|A0A072UPQ0_MEDTR	0	LRR receptor-like kinase family protein {ECO:0000313\|EMBL:KEH31809.1}

Sequence

Transcript Sequence

>Glyur001309s00032169.1
GGCCCTTGGCAGAACTTGCCATAGCAGACAAAATGCGCCTGCCCATATTTTCAGGATACAATTCGTCTCATCCATCTTAAGTNAAAATCCAAGAGAAAATGAAAGCTTATTTTATAAATGAAGCCACATCAAAAGATAAGCAGTTGATATTAAAAACAAAATTTNGAAAGAAAGGCACTCACCCACCCATCTCTGTTGCTCACTCTCAACATTTTAAAAACTGTTATAATCCTTCTCCCCACCTCTTCACTCCACTCCAACATAAACAAATACTTATAAACAACCCTCTATAAAAATTCCATTTTCCCCCCTTAGAAACATCATGGCCTAGCTGTTTCTTGGATCCGGAGATTCTGGGTTCTTTTAATTTGCAATATAACTCTTTAGTCTTTACTATATTTTTTTATAAACGCAGTAACCCACAAGACATGATTTGGTTCCTTCCCGTTGTTCCTCCCTAGGCTCAATCAAACCTTAATTTTCTGCTTCTCTTTCATTGGAGTTTGTAGCATATTGTTGTAATGCCTGTAAATCCATGGACCCTCTCCTTCTTGTGCATTTTCCTTTTTCATTCTTTTATAGCTCTTGCAGTTGCAGTAAACCCACAAGGGGAAGCTCTTCTTTCATGGAAGAGGACCCTGAACGGATCATCCCTGGAGATATTGAGTAACTGGGACCCAATTGAAGACACACCATGTAACTGGTTTGGAGTCAGTTGCAACTTGGAGAACCAAGTAGTACAATTGGATCTGAGGNATGTGGATTTGCTTGGAAGACTTCCAACCAATTTCACCTCATTGCTCTCCTTGAGGAGTCTCATCTTAACCGGAACCAACCTCACCGGTTCAATCCCAAAAGAAATAGGCAACCTTGTGGAACTCACCTACTTGGACCTGAGTGACAATGCCTTGAGTGGAGAAATCCCAAGTGAGCTCTGTTACTTGCCTAAATTAGAGGAACTNCACCTGAACTCCAACGAGCTCGTGGGGTCAATTCCAATCGCAATTGGGAACCTCACAAAGCTGGAGAAGCTGATCTTATATGACAATCAACTCAGCGGTGAAGTTCCCAGCACCATTGGGAACATGAGGAACCTGCAAGTGATAAGAGCAGGGGGAAACAAGAACCTCGAAGGCCCTCTGCCACAAGAAATTGGAAACTGTTCCAATTTGGTCATGTTGGGGCTGGCTGAAACAAGCATCTCAGGTTTCATGCCACCAACTCTTGGCCTTTTGAAGAAGCTTGAAACCTTAGCCATTTACACTTCCCTCCTCTCTGGCCAAATACCCCCTGAACTCGGCGACTGCACTGAGCTGCAAAACATTTATCTTTATGAGAATTCACTCACCGGATCGATTCCAAGCAAATTGGGGAACCTCAAGAACCTCAAAAACCTGCTGCTGTGGCAGAACAATTTAGTCGGCACCATCCCACCGGAGATTGGGAACTGTTACCAGTTATCAGTGATTGATGCGTCAATGAATTCAATAACGGGAAGCATTCCCAAGAGTTTCGGGAACCTGACGTCGCTGCAAGAACTTCAACTCAGTGTGAACCAGATTTCGGGGGAGATTCCCGGAGAGCTGGGAAACTGTCAGCAACTCACGCACGTGGAGCTGGACAACAACGTGATTACGGGCACGATACCTTCCGAATTGGGTAACCTTGGGAATTTAACGTTGTTGTTCCTGTGGCACAACAGGCTACAAGGTAACATACCCTCGTCCCTTTCCAATTGTCAAANCCTTGAGGCTATTGATCTGTCGCAGAATGCGTTGACGGGTCCCATACCAAAGGGGATATTCCAGCTCAAGAATCTCAACAAGCTTTTGCTCCTCTCTAATAACCTCTCCGGCAAAATCCCCTCTCAGATTGGGAATTGTTCGTCTCTCATCCGCTTCCGTGCAAACGACAACAACATTACCGGAACCATCCCCTCGCAGATTGGGAATCTCAAGAATTTGAATTTCCTGGACCTCGGCAAAAACATGATTTCCGGGGCTATCCCGGAGGAAATCTCCGGCAGCCGGAATCTCACCTTCTTGGACTTGCATTCCAATTTCATCGCCGGAACCTTGCCGGAAAGTCTCAGCCAGCTCGTCTCGCTTCAGTTTCTCGATGTTTCCNATAATATGATCGAAGGCACGCTCAGCCCTGCCCTCGGCTCGCTGGAAGCTCTCACCAAACTTGTTCTCAAGAAGAATCGAATCTCCGGCTCAATCCCGAGTCGACTCGGTTCCTGTGCCAAGCTTCAGTTGCTGGACCTTAGCAGCAACCGCCTCTCCGGTGAGATCCCCGGCAACATAGGAAGCATCCCGGCGCTGGAAATAGCTCTGAATCTGAGCATGAACCAGCTCTCCGGCNAGATCCCTCGTGAGTTTTCGGGTTTGACGAAGCTCGGGGTCCTTGACCTATCTCACAACAATCTCANCGGAAACCTCGACTACCTCGCCGGCCTGCAAAATCTCGTGGTCCTCAATATCTCGAGCAACGAATTCTCCGGGCGCGTACCGGACACGCCTTTCTTCGCGAAGCTCCCCCTGAGCGTGCTCGCCGGGAACCCGTCGCTGTGCTTCACCGGCAACCAGTGCGGCGGCGACGGCGGGGGAAAACCGGGGAAACGTGCGAGGGAGGCTCGCGTGGTCATGGTGGTCCTGCTCTGCGCCGCATGCGTGCTCCTCATGGCGGCGCTGTACGTTGTCGTCGCAGCAAAACGACGAGGGGACCAGGAAAACGACGCTGACCTTGAAGGAAAAGACAGTGACGCTGACATGGGCCCACCATGGGAGGTGACACTCTACCAGAAGCTCGACCTGTCAATCTATGACGTAGCCAAATGCCTCTCTGCTGGCAACGTTATCGGCCACGGTCGATCCGGCGTCGTTTACAGGGCCAACATGCCAGCCACGGGATTGACCATCGCGGTGAAAAAGTTCAGGTCTTCGGAGAAGTTCTCCGCGTCGGCGTTTTCGTCGGAGATTGCCACGCTGGCGCGAATACGGCACCGGAACATCGTGCGGCTCTTGGGTTGGGGTGCGAACCGGAGGACCAAGTTACTGTTCTATGATTATTTACCGTACGGTAACTTGGACACGCTGTTACACGAGGGGTGCACAGGATTAGTGGATTGGGAGACGCGGCTCAAGATAGCACTGGGCGTCGCTGAGGGCTTGGCTTACTTGCACCACGACTGCGTACCTGCTATCTTACACCGGGACGTCAAGGCGCAGAATATTTTGTTAGGAGATNGATATGAGCCCTGTTTGGCTGATTTTGGATTCGCTCGCTTCGTCGAAGAAGATCACGCTTCCTTTTCCCTTAATCCTCAGTTCGCGGGTTCTTACGGCTACATTGCTCCCGAGTATGCTTGCATGCTCAAGATCACGGAGAAGAGCGATGTATACAGCTTTGGGGTGGTCCTACTAGAGATAATAACGGGGAAAAGGCCGGTGGATCCATTATTCCCGGATGGACATGTTATTCAATGGGTCAGGGAGCACTTAAAGAGCAAGANGGACCCAATTGAGGTTCTGGATTCCAAGCTTCAAGGCCATCCAGACACACAAATACAAGAGATGTTACAAGCACTTGGTATCTCTCTCCTCTGTACAAGTAATCGTGCAGATGATCGACCCACAATGAAAGATGTCGCAGCATTATTGAGGGAGATTCGACACGACCCTACACCAGGGGCTGAGCCCCACAAGCCCAAAAGAACAGAGGCCTCGTCCTATTCATCGTCCTCAGTAACCCCAGCTCAGTTATTGCTCCTGCAGTCTAATTCCCATTCCTCTTCCCTTGCTTATTCCTCTTCCTCGGCCGCGGCAGGCTACCACTCACCAAGGAACCAATCATGAAATTCAAGATTGATCAAGCCATTAGATCGTGTTAGATATCTTGATTGATTAATGATTAGTTAGTTGCAGTAGTTAACGTTAGTGTAATGTTGGGCATTGTAAAGTTACTTTGGGGAATTCTGATTGATGACAAGATAAAAAGCAANGTGAGTCGAGTGTACAGCAGCTTAGTT

Protein Sequence

>Glyur001309s00032169.1
MPVNPWTLSFLCIFLFHSFIALAVAVNPQGEALLSWKRTLNGSSLEILSNWDPIEDTPCNWFGVSCNLENQVVQLDLRXVDLLGRLPTNFTSLLSLRSLILTGTNLTGSIPKEIGNLVELTYLDLSDNALSGEIPSELCYLPKLEELHLNSNELVGSIPIAIGNLTKLEKLILYDNQLSGEVPSTIGNMRNLQVIRAGGNKNLEGPLPQEIGNCSNLVMLGLAETSISGFMPPTLGLLKKLETLAIYTSLLSGQIPPELGDCTELQNIYLYENSLTGSIPSKLGNLKNLKNLLLWQNNLVGTIPPEIGNCYQLSVIDASMNSITGSIPKSFGNLTSLQELQLSVNQISGEIPGELGNCQQLTHVELDNNVITGTIPSELGNLGNLTLLFLWHNRLQGNIPSSLSNCQXLEAIDLSQNALTGPIPKGIFQLKNLNKLLLLSNNLSGKIPSQIGNCSSLIRFRANDNNITGTIPSQIGNLKNLNFLDLGKNMISGAIPEEISGSRNLTFLDLHSNFIAGTLPESLSQLVSLQFLDVSXNMIEGTLSPALGSLEALTKLVLKKNRISGSIPSRLGSCAKLQLLDLSSNRLSGEIPGNIGSIPALEIALNLSMNQLSGXIPREFSGLTKLGVLDLSHNNLXGNLDYLAGLQNLVVLNISSNEFSGRVPDTPFFAKLPLSVLAGNPSLCFTGNQCGGDGGGKPGKRAREARVVMVVLLCAACVLLMAALYVVVAAKRRGDQENDADLEGKDSDADMGPPWEVTLYQKLDLSIYDVAKCLSAGNVIGHGRSGVVYRANMPATGLTIAVKKFRSSEKFSASAFSSEIATLARIRHRNIVRLLGWGANRRTKLLFYDYLPYGNLDTLLHEGCTGLVDWETRLKIALGVAEGLAYLHHDCVPAILHRDVKAQNILLGDXYEPCLADFGFARFVEEDHASFSLNPQFAGSYGYIAPEYACMLKITEKSDVYSFGVVLLEIITGKRPVDPLFPDGHVIQWVREHLKSKXDPIEVLDSKLQGHPDTQIQEMLQALGISLLCTSNRADDRPTMKDVAALLREIRHDPTPGAEPHKPKRTEASSYSSSSVTPAQLLLLQSNSHSSSLAYSSSSAAAGYHSPRNQS

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold01309	13162	18103	-

Gene family

Gene family	subfamily
Protein Kinases Family	PPC:1.12.4

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006468 protein phosphorylation

molecular_function

GO:0004672 protein kinase activity

GO:0005515 protein binding

GO:0005524 ATP binding

GO:0016772 transferase activity, transferring phosphorus-containing groups

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001309s00032169.1	PF08263.7	LRRNT_2	27	67	7.30E-10
Glyur001309s00032169.1	PF12799.2	LRR_4	119	154	6.00E-07
Glyur001309s00032169.1	PF12799.2	LRR_4	335	372	2.30E-06
Glyur001309s00032169.1	PF00560.28	LRR_1	384	406	1.3
Glyur001309s00032169.1	PF13855.1	LRR_8	576	636	1.80E-07
Glyur001309s00032169.1	PF00069.20	Pkinase	777	1019	4.00E-44

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	6.581
SRR1783600	control	6.631
SRR1783602	moderate drought stress	10.837
SRR1811619	moderate drought stress	10.716

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	1.828
DRR006520	Root Summer glycyrrhizin high producing strain	1.793
DRR006521	Root Winter glycyrrhizin high producing strain	0.829
DRR006522	Root Winter glycyrrhizin high producing strain	0.863
DRR006523	Root Summer glycyrrhizin low producing strain	0.867
DRR006524	Root Summer glycyrrhizin low producing strain	0.851
DRR006525	Leaf Summer glycyrrhizin high producing strain	6.886
DRR006526	Leaf Summer glycyrrhizin high producing strain	6.877

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	24.937
SRR2868004	Drought Stress (root)	17.193
SRR2967015	Control (root)	15.090

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	2.454
SRR9715740	Leaf	2.245
SRR9715741	Leaf	1.609
SRR9715739	Root	2.078
SRR9715742	Root	2.862
SRR9715743	Root	2.501

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	1.323
SRR8749028	MeJA induced 9h	1.427
SRR8749029	MeJA induced 9h	0.785
SRR8749030	Uninduced	0.767
SRR8749031	Uninduced	0.348
SRR8749032	Uninduced	0.678

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	9.117
SRR8400027	Control - Root	11.026