Gene detail information of Glyur001309s00032168 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G50150.1 | 1.00E-162 | Protein of Unknown Function (DUF239) |
| NR | XP_004508889.1 | 0 | PREDICTED: uncharacterized protein LOC101501856 [Cicer arietinum] |
| trEMBL | tr|I1MTE8|I1MTE8_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA17G09450.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold01309 | 4102 | 7673 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur001309s00032168.1 | PF10799.3 | YliH | 2 | 54 | 0.00025 |
| Glyur001309s00032168.1 | PF14365.1 | DUF4409 | 108 | 212 | 3.30E-33 |
| Glyur001309s00032168.1 | PF03080.10 | DUF239 | 219 | 452 | 2.20E-87 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 8.186 |
| SRR1783600 | control | 8.435 |
| SRR1783602 | moderate drought stress | 7.390 |
| SRR1811619 | moderate drought stress | 7.461 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 14.654 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 14.569 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 1.432 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 1.651 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 20.152 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 19.707 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 26.450 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 26.867 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 50.122 |
| SRR2868004 | Drought Stress (root) | 41.653 |
| SRR2967015 | Control (root) | 35.958 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 25.964 |
| SRR9715740 | Leaf | 32.583 |
| SRR9715741 | Leaf | 20.323 |
| SRR9715739 | Root | 2.735 |
| SRR9715742 | Root | 13.670 |
| SRR9715743 | Root | 11.707 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 2.179 |
| SRR8749028 | MeJA induced 9h | 0.213 |
| SRR8749029 | MeJA induced 9h | 0.766 |
| SRR8749030 | Uninduced | 0.137 |
| SRR8749031 | Uninduced | 0.000 |
| SRR8749032 | Uninduced | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 17.399 |
| SRR8400027 | Control - Root | 19.861 |